View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1088_low_1 (Length: 790)

Name: NF1088_low_1
Description: NF1088
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1088_low_1
NF1088_low_1
[»] chr7 (10 HSPs)
chr7 (154-590)||(35629093-35629530)
chr7 (169-559)||(35635528-35635918)
chr7 (635-788)||(35629575-35629730)
chr7 (30-160)||(35628930-35629060)
chr7 (635-777)||(35635993-35636135)
chr7 (635-788)||(35632731-35632884)
chr7 (233-375)||(35632337-35632479)
chr7 (299-375)||(35634252-35634328)
chr7 (120-160)||(35635446-35635486)
chr7 (102-160)||(35634012-35634073)
[»] chr3 (7 HSPs)
chr3 (646-788)||(10299115-10299257)
chr3 (646-788)||(10319547-10319689)
chr3 (646-788)||(10336663-10336805)
chr3 (228-547)||(10299366-10299685)
chr3 (228-547)||(10319798-10320117)
chr3 (228-547)||(10336914-10337233)
chr3 (646-744)||(10338459-10338557)
[»] scaffold0581 (1 HSPs)
scaffold0581 (120-156)||(2744-2780)


Alignment Details
Target: chr7 (Bit Score: 370; Significance: 0; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 154 - 590
Target Start/End: Original strand, 35629093 - 35629530
Alignment:
Q  154 tgagagccagatgcatgcgatgaacttcctttaaaccagtctttaatagtcttcttcagcctctgcagccaatgagtggttaatccagaccgtgcaaaag 253  Q
    |||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35629093 tgagagccagatgcattcgatgaacttcctttaaaccggtctttaatagtcttcttcagcctctgcagccaatgagtggttaatccagaccgtgcaaaag 35629192  T
Q  254 cagatggtgtaggtctgtcagatgagcttttgtaggacaaattatgtatgggcatcctcagaaaagacgttttgtcaaagaacacaacaatcacacttat 353  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  35629193 cagatggtgtaggtctgtcagatgagcttttgtaggacaaattatgtacgggcatcctcagaaacgacgttttgtcaaagaacacaacaatcacacttat 35629292  T
Q  354 atcatcatgaaaagacctcctgttcccattgccacgtcccagattagcatgcatcatgttattacaggtaacattcccattagcagccgcttccactaga 453  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| | |||||    
T  35629293 atcatcatgaaaagacctcctgttcccatcgccacgtcccagattagcatgcatcatgctattacaggtaacattcccattagcagccgctttcgctaga 35629392  T
Q  454 acagtactcacaagcctttttgcaattccctgcaaaatccaccaaagc--ataactaaatcaaaagccagcaaacataacggtaatgactcaaattcgtc 551  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35629393 acagtactcacaagcctttttgcaattccctgcaaaatccaccaaagcatataactaaatcaaaagccagcaaacataacggtaatgactcaaattcgtc 35629492  T
Q  552 tttgatgcnnnnnnncacaaatacttattttcattttat 590  Q
    ||||||||       ||||||||||||||||||||||||    
T  35629493 tttgatgc-aaaaaacacaaatacttattttcattttat 35629530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 169 - 559
Target Start/End: Original strand, 35635528 - 35635918
Alignment:
Q  169 tgcgatgaacttcctttaaaccagtctttaatagtcttcttcagcctctgcagccaatgagtggttaatccagaccgtgcaaaagcagatggtgtaggtc 268  Q
    |||||||||||| ||| ||||| || |||||||||||||| |||||||||||||| |||  ||||||||||||||  ||||||||| |||| ||||||||    
T  35635528 tgcgatgaacttgcttgaaaccggtttttaatagtcttctgcagcctctgcagcccatgcatggttaatccagactctgcaaaagctgatgttgtaggtc 35635627  T
Q  269 tgtcagatgagcttttgtaggacaaattatgtatgggcatcctcagaaaagacgttttgtcaaagaacacaacaatcacacttatatcatcatgaaaaga 368  Q
    || |||||||||||||||||||||||||||||| ||||||||||||||  ||| ||||||| |||||||||||||||||||||||||||||||||||| |    
T  35635628 tggcagatgagcttttgtaggacaaattatgtaggggcatcctcagaatcgactttttgtccaagaacacaacaatcacacttatatcatcatgaaaata 35635727  T
Q  369 cctcctgttcccattgccacgtcccagattagcatgcatcatgttattacaggtaacattcccattagcagccgcttccactagaacagtactcacaagc 468  Q
    |||||||||||||| |||||||||||||||||||| | ||||| ||||| |||||  ||||| ||||||||||||||   ||||||||||||||||||||    
T  35635728 cctcctgttcccatcgccacgtcccagattagcattcttcatggtattataggtagaattcctattagcagccgcttgtgctagaacagtactcacaagc 35635827  T
Q  469 ctttttgcaattccctgcaaaatccaccaaagcataactaaatcaaaagccagcaaacataacggtaatgactcaaattcgtctttgatgc 559  Q
    ||||||||||||||||| ||||  ||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  35635828 ctttttgcaattccctgaaaaaatcaccatagcataactaaatcaaaagccagcaaacataacagtaatgactcaaattcgtctttgatgc 35635918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 133; E-Value: 1e-68
Query Start/End: Original strand, 635 - 788
Target Start/End: Original strand, 35629575 - 35629730
Alignment:
Q  635 tcatagaaatcgatat--atacttacatttcttggattgttttgaacaatttcaactgcttgttcatttgacaagaaatcccaaagtccatcagaagcaa 732  Q
    ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35629575 tcatagaaatcgatatatatacttacatttcttggattgttttgaacaatttcaactgcttgttcatttgacaagaaatcccaaagtccatcagaagcaa 35629674  T
Q  733 atataagaaactcgtcactatatgttaaaactctagtacgcatctgtggtgctgct 788  Q
    |||||||||||| |||||||||||||||||||||||||||||||| |||| |||||    
T  35629675 atataagaaacttgtcactatatgttaaaactctagtacgcatctctggttctgct 35629730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 30 - 160
Target Start/End: Original strand, 35628930 - 35629060
Alignment:
Q  30 agtcatatgtaactgtatcaaccttatcataaagtgcaaggaatccaccttgttctactaattctgtttaagattcttccaaggactctgagcccgagaa 129  Q
    |||||||| ||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35628930 agtcatatataactctatcaaccttatcataaactgcaaggaatccaccttgttctactaattctgtttaagattcttccaaggactctgagcccgagaa 35629029  T
Q  130 ctctgacctaaaaggctctgagtttgagagc 160  Q
    |||||||||||||||||||||||||||||||    
T  35629030 ctctgacctaaaaggctctgagtttgagagc 35629060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 635 - 777
Target Start/End: Original strand, 35635993 - 35636135
Alignment:
Q  635 tcatagaaatcgatatatacttacatttcttggattgttttgaacaatttcaactgcttgttcatttgacaagaaatcccaaagtccatcagaagcaaat 734  Q
    ||||||||||||||||| || || |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35635993 tcatagaaatcgatatacacatatatttcttgaattgttttgaacaatttcaactgcttgttcatttgacaagaaatcccaaagtccatcagaagcaaat 35636092  T
Q  735 ataagaaactcgtcactatatgttaaaactctagtacgcatct 777  Q
    || |||||||  ||  | | ||||||| |||||| ||||||||    
T  35636093 atcagaaacttatcgttctctgttaaatctctagaacgcatct 35636135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 635 - 788
Target Start/End: Original strand, 35632731 - 35632884
Alignment:
Q  635 tcatagaaatcgatatatacttacatttcttggattgttttgaacaatttcaactgcttgttcatttgacaagaaatcccaaagtccatcagaagcaaat 734  Q
    ||||||| || ||||||||| ||||||||||||||| ||||||||||||||| ||||||| |||||||||||||| |||||||||||| |||| ||||||    
T  35632731 tcatagatatggatatatacatacatttcttggattcttttgaacaatttcagctgcttgctcatttgacaagaactcccaaagtccaacagacgcaaat 35632830  T
Q  735 ataagaaactcgtcactatatgttaaaactctagtacgcatctgtggtgctgct 788  Q
    ||||||||||  ||| | | ||||||||||||||||  ||||| |||| |||||    
T  35632831 ataagaaacttatcattctctgttaaaactctagtaaacatctctggttctgct 35632884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 233 - 375
Target Start/End: Original strand, 35632337 - 35632479
Alignment:
Q  233 ttaatccagaccgtgcaaaagcagatggtgtaggtctgtcagatgagcttttgtaggacaaattatgtatgggcatcctcagaaaagacgttttgtcaaa 332  Q
    |||||||||||||||||||| |||||||   |||  ||||| |||||| | |||||||||||||||||| | ||  |||||||||  || ||||| | ||    
T  35632337 ttaatccagaccgtgcaaaatcagatggcagaggcgtgtcaaatgagcatatgtaggacaaattatgtacgcgccgcctcagaaacaactttttggccaa 35632436  T
Q  333 gaacacaacaatcacacttatatcatcatgaaaagacctcctg 375  Q
    ||||| |||||| ||||||||||||||||||||||||||||||    
T  35632437 gaacaaaacaatgacacttatatcatcatgaaaagacctcctg 35632479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 299 - 375
Target Start/End: Original strand, 35634252 - 35634328
Alignment:
Q  299 gtatgggcatcctcagaaaagacgttttgtcaaagaacacaacaatcacacttatatcatcatgaaaagacctcctg 375  Q
    ||||| || |||||||||| ||  |||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  35634252 gtatgcgcctcctcagaaacgaatttttgtcaaagaacacaacaatcacacttatatcatcacgaaaagacctcctg 35634328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 120 - 160
Target Start/End: Original strand, 35635446 - 35635486
Alignment:
Q  120 agcccgagaactctgacctaaaaggctctgagtttgagagc 160  Q
    |||||||||||||||||| ||||||||||||||||||||||    
T  35635446 agcccgagaactctgacccaaaaggctctgagtttgagagc 35635486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 102 - 160
Target Start/End: Original strand, 35634012 - 35634073
Alignment:
Q  102 attcttccaaggactctgagcccgagaactctg---acctaaaaggctctgagtttgagagc 160  Q
    |||||| ||||| ||||||||||||||||||||   ||| ||||||||||||||||||||||    
T  35634012 attctttcaagggctctgagcccgagaactctgaccacccaaaaggctctgagtttgagagc 35634073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 83; Significance: 7e-39; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 83; E-Value: 7e-39
Query Start/End: Original strand, 646 - 788
Target Start/End: Complemental strand, 10299257 - 10299115
Alignment:
Q  646 gatatatacttacatttcttggattgttttgaacaatttcaactgcttgttcatttgacaagaaatcccaaagtccatcagaagcaaatataagaaactc 745  Q
    ||||||||| ||||||||| ||||| ||||||||||||||| | |||| || ||||||||||||||||||||||||||||||||||||||||| |||||     
T  10299257 gatatatacatacatttctaggattcttttgaacaatttcagcagcttttttatttgacaagaaatcccaaagtccatcagaagcaaatataataaactt 10299158  T
Q  746 gtcactatatgttaaaactctagtacgcatctgtggtgctgct 788  Q
     ||| ||| |||||||||||||||| |||||| |||| |||||    
T  10299157 atcattatctgttaaaactctagtatgcatctctggttctgct 10299115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 83; E-Value: 7e-39
Query Start/End: Original strand, 646 - 788
Target Start/End: Complemental strand, 10319689 - 10319547
Alignment:
Q  646 gatatatacttacatttcttggattgttttgaacaatttcaactgcttgttcatttgacaagaaatcccaaagtccatcagaagcaaatataagaaactc 745  Q
    ||||||||| ||||||||| ||||| ||||||||||||||| | |||| || ||||||||||||||||||||||||||||||||||||||||| |||||     
T  10319689 gatatatacatacatttctaggattcttttgaacaatttcagcagcttttttatttgacaagaaatcccaaagtccatcagaagcaaatataataaactg 10319590  T
Q  746 gtcactatatgttaaaactctagtacgcatctgtggtgctgct 788  Q
     ||| ||| |||||||||||||||| |||||| |||| |||||    
T  10319589 atcattatctgttaaaactctagtatgcatctctggttctgct 10319547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 646 - 788
Target Start/End: Complemental strand, 10336805 - 10336663
Alignment:
Q  646 gatatatacttacatttcttggattgttttgaacaatttcaactgcttgttcatttgacaagaaatcccaaagtccatcagaagcaaatataagaaactc 745  Q
    ||||||||| ||||||||| ||||| ||| ||||||||||| | |||| || ||||||||||||||||||||||||||||||||||||||||| |||||     
T  10336805 gatatatacatacatttctaggattctttcgaacaatttcagcagcttttttatttgacaagaaatcccaaagtccatcagaagcaaatataataaactg 10336706  T
Q  746 gtcactatatgttaaaactctagtacgcatctgtggtgctgct 788  Q
     ||| ||| |||||||||||||||| |||||| |||| |||||    
T  10336705 atcattatctgttaaaactctagtatgcatctctggttctgct 10336663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 228 - 547
Target Start/End: Complemental strand, 10299685 - 10299366
Alignment:
Q  228 agtggttaatccagaccgtgcaaaagcagatggtgtaggtctgtcagatgagcttttgtaggacaaattatgtatgggcatcctcagaaaagacgttttg 327  Q
    ||||||||||||| |  |||||||| | ||| ||  |||  |||||||||||| | |||||||||||||| |||  |||  |||| |||| |||||||||    
T  10299685 agtggttaatccaaattgtgcaaaatctgattgtacaggcatgtcagatgagcctgtgtaggacaaattaagtacaggctgcctcggaaacgacgttttg 10299586  T
Q  328 tcaaagaacacaacaatcacacttatatcatcatgaaaagacctcctgttcccattgccacgtcccagattagcatgcatcatgttattacaggtaacat 427  Q
    || |||||||| |||||||||||||||||||||||||||||||||| | || |||||   ||||||  |  |||   |   || ||  || ||||||| |    
T  10299585 tccaagaacaccacaatcacacttatatcatcatgaaaagacctccggctcacattgttgcgtcccgtagcagcggcctgaatcttcctataggtaacct 10299486  T
Q  428 tcccattagcagccgcttccactagaacagtactcacaagcctttttgcaattccctgcaaaatccaccaaagcataactaaatcaaaagccagcaaaca 527  Q
    |||   |   ||| ||| || ||||| | ||||||| ||||||||||||||||||||||||||||||||| || |||| ||||| ||||||| ||||| |    
T  10299485 tccttcttttagcagctaccgctagagcggtactcagaagcctttttgcaattccctgcaaaatccaccacagaataattaaattaaaagcctgcaaata 10299386  T
Q  528 taacggtaatgactcaaatt 547  Q
    |||| |||| ||||||||||    
T  10299385 taactgtaaagactcaaatt 10299366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 228 - 547
Target Start/End: Complemental strand, 10320117 - 10319798
Alignment:
Q  228 agtggttaatccagaccgtgcaaaagcagatggtgtaggtctgtcagatgagcttttgtaggacaaattatgtatgggcatcctcagaaaagacgttttg 327  Q
    ||||||||||||| |  |||||||| | ||| ||  ||| ||||||||||||| | |||||||||||||| |||  |||  |||| |||| |||||||||    
T  10320117 agtggttaatccaaattgtgcaaaatctgattgtacaggcctgtcagatgagcctgtgtaggacaaattaagtacaggctgcctcggaaacgacgttttg 10320018  T
Q  328 tcaaagaacacaacaatcacacttatatcatcatgaaaagacctcctgttcccattgccacgtcccagattagcatgcatcatgttattacaggtaacat 427  Q
    || |||||||| |||||||||||||||||||||||||||||||||| | || |||||   ||||||  |  |||   |   || ||  || ||||||| |    
T  10320017 tccaagaacaccacaatcacacttatatcatcatgaaaagacctccggctcacattgttgcgtcccgtagcagcggcctgaatcttcctataggtaacct 10319918  T
Q  428 tcccattagcagccgcttccactagaacagtactcacaagcctttttgcaattccctgcaaaatccaccaaagcataactaaatcaaaagccagcaaaca 527  Q
    |||   |   ||| ||| || ||||| | ||||||| ||||||||| ||||||||||||||||||||||| || |||| ||||| ||||||| ||||| |    
T  10319917 tccttcttttagcagctaccgctagagcggtactcagaagccttttcgcaattccctgcaaaatccaccacagaataattaaattaaaagcctgcaaata 10319818  T
Q  528 taacggtaatgactcaaatt 547  Q
    |||| |||| ||||||||||    
T  10319817 taactgtaaagactcaaatt 10319798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 228 - 547
Target Start/End: Complemental strand, 10337233 - 10336914
Alignment:
Q  228 agtggttaatccagaccgtgcaaaagcagatggtgtaggtctgtcagatgagcttttgtaggacaaattatgtatgggcatcctcagaaaagacgttttg 327  Q
    ||||||||||||| |  |||||||| | ||| ||  ||| ||||||||||||| | |||||||||||||| |||  |||  |||| |||| |||||||||    
T  10337233 agtggttaatccaaattgtgcaaaatctgattgtacaggcctgtcagatgagcctgtgtaggacaaattaagtacaggctgcctcggaaacgacgttttg 10337134  T
Q  328 tcaaagaacacaacaatcacacttatatcatcatgaaaagacctcctgttcccattgccacgtcccagattagcatgcatcatgttattacaggtaacat 427  Q
    || |||||||| |||||||||||||||||||||||||||||||||| | || |||||   ||||||  |  |||   |   || ||  || ||||||| |    
T  10337133 tccaagaacaccacaatcacacttatatcatcatgaaaagacctccggctcacattgttgcgtcccgtagcagcggcctgaatcttcctataggtaacct 10337034  T
Q  428 tcccattagcagccgcttccactagaacagtactcacaagcctttttgcaattccctgcaaaatccaccaaagcataactaaatcaaaagccagcaaaca 527  Q
    |||   |   ||| ||| || ||||| | ||||||| ||||||||| ||||||||||||||||||||||| || |||| ||||| ||||||| ||||| |    
T  10337033 tccttcttttagcagctaccgctagagcggtactcagaagccttttcgcaattccctgcaaaatccaccacagaataattaaattaaaagcctgcaaata 10336934  T
Q  528 taacggtaatgactcaaatt 547  Q
    |||| |||| ||||||||||    
T  10336933 taactgtaaagactcaaatt 10336914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 646 - 744
Target Start/End: Complemental strand, 10338557 - 10338459
Alignment:
Q  646 gatatatacttacatttcttggattgttttgaacaatttcaactgcttgttcatttgacaagaaatcccaaagtccatcagaagcaaatataagaaact 744  Q
    ||||||||| ||||||||||||||| ||||||||||||||||||||| | |||||||||||||| |||||||||||| |||| ||||||||| ||||||    
T  10338557 gatatatacatacatttcttggattcttttgaacaatttcaactgctagctcatttgacaagaactcccaaagtccaacagaggcaaatatatgaaact 10338459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0581 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0581
Description:

Target: scaffold0581; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 120 - 156
Target Start/End: Original strand, 2744 - 2780
Alignment:
Q  120 agcccgagaactctgacctaaaaggctctgagtttga 156  Q
    |||||||||||||||||||||||||||||||||||||    
T  2744 agcccgagaactctgacctaaaaggctctgagtttga 2780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University