View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1088_low_10 (Length: 271)
Name: NF1088_low_10
Description: NF1088
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1088_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 50 - 238
Target Start/End: Complemental strand, 18347991 - 18347803
Alignment:
| Q |
50 |
tttagcccaaagaatcttagggaaaacatgttttttgaaagcataagcatctttcaatgttagatcacctggtgcactatgtttctagaccagggcatca |
149 |
Q |
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| T |
18347991 |
tttagcccaaagaatcttaggaaaaacatgttttttgaaagcataagcatctttcaatgttagatcacctggtgcactatgtttccagaccagggcatca |
18347892 |
T |
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| Q |
150 |
gatttactgagataggcaagggttacctttgaaacaattgatctcaaattaggatacaactgatgtaagtcttcaggaatgttccatct |
238 |
Q |
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| T |
18347891 |
gatttactgagattggcaagggttacctttgaaacaattgatctcaaattaggatacaactgatgtaagtcttcaggaatgttccatct |
18347803 |
T |
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