View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1088_low_4 (Length: 689)
Name: NF1088_low_4
Description: NF1088
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1088_low_4 |
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| [»] scaffold0110 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 58; Significance: 5e-24; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 162 - 255
Target Start/End: Complemental strand, 24937249 - 24937156
Alignment:
| Q |
162 |
aacgaagtgtttctttcactgtatcagccatgcatctgctactcaaaaacacaaagtttcacatagtgtctaagggaccctacaggaccccgtc |
255 |
Q |
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| T |
24937249 |
aacggagtgtttctttcactgtatcagccctacatttgctattcaaaaagacaaggtttcacatagtgtctaagggcccctacaggacaccgtc |
24937156 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 30 - 72
Target Start/End: Complemental strand, 24937388 - 24937346
Alignment:
| Q |
30 |
atctcaccgatctcaactatgaaggttggagagacaactaata |
72 |
Q |
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| T |
24937388 |
atctcaccgatctcaactatgaaggttggggagacaactaata |
24937346 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 94 - 162
Target Start/End: Complemental strand, 24937349 - 24937280
Alignment:
| Q |
94 |
aataaacctcc-aaatattcactaagtttgaatctagaaactgctcagggaccgagatgttaaataaaaa |
162 |
Q |
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| T |
24937349 |
aataaacctcccaaatattcactaagttttaatctagaaactgcagagggaccaagatgtttaatcaaaa |
24937280 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0110 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0110
Description:
Target: scaffold0110; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 167 - 616
Target Start/End: Original strand, 41940 - 42402
Alignment:
| Q |
167 |
agtgtttctttcactgtatcagccatgcatctgctactcaaaa----acaca---aagtttcacatagtgtctaagggaccctacaggaccccgtcatta |
259 |
Q |
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| T |
41940 |
agtgtttgcttcactgtatcagccctgaatccgctactcaaaacgcaacacagcgatgtttcgcatagcgtctaagggcctctacaggccgccgctatca |
42039 |
T |
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| Q |
260 |
actacagagttgccacatatatcagtatgccattttccgccaagacatgataaatgtatcatgaatacc-aaacaataa-cgtttgtctgtggtaaaaag |
357 |
Q |
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| T |
42040 |
actaaagagtggacacatacatcagtatgctattttcagctaaaacatgataaatgaatcacgaaacccaaaataataatcctttgtatgaggtaaaaag |
42139 |
T |
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| Q |
358 |
tcctgccaagacatgcaccaagaccaagagtatattatnnnnnnnnntactaaaaccaatacataaaaccaaatattgtg--atgtaagaaaccatagtt |
455 |
Q |
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| T |
42140 |
tacttccaagacatgcactacaagcaagagtaaatt---caaaaaaatactaaaactaatacataaaaccaaatgttgtgacaacagagaagtcatggtt |
42236 |
T |
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| Q |
456 |
gtaaatatcaaagtgcacagcaaaggctaggagactaagtttacagtaaagta-taaaaaatcaaattagaataac---agaagttccaaagtcagagca |
551 |
Q |
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| T |
42237 |
gtaaatatcaaagctagcaacaaatgctaggagattaagcacaatataaagtattaaaaaatcaaattagaataacaaaagaagttccaaaatcagaaca |
42336 |
T |
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| Q |
552 |
agagcttagattgtactaagtatttggctta-gaattaaattatttaacaaccattgtagaatagc |
616 |
Q |
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| T |
42337 |
agaagcaaaattgtaccatgtattttgcctaggaaataaataatttaaaaaccattgtagaatagc |
42402 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 352 - 387
Target Start/End: Complemental strand, 8939973 - 8939938
Alignment:
| Q |
352 |
aaaaagtcctgccaagacatgcaccaagaccaagag |
387 |
Q |
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| T |
8939973 |
aaaaaatcctgccaagacatgcaccaagaccaagag |
8939938 |
T |
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