View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1088_low_5 (Length: 525)
Name: NF1088_low_5
Description: NF1088
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1088_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 30 - 422
Target Start/End: Original strand, 27124246 - 27124638
Alignment:
| Q |
30 |
atgtttagtaaaaggaaattagtagtcttatttgtgaagtttgaaatattaaaggttttacattgttaatatgattttccaagcacatttgtgacaatga |
129 |
Q |
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| T |
27124246 |
atgtttagtaaaaggaaattagtagtcttatttgtgaagtttgaaatattaaaggttttacatttttaatatgattttccaagcacattcgtgacaatga |
27124345 |
T |
|
| Q |
130 |
tttaagagttaagtatgatcttgtagaattttccatccgttagtagaagaagaaaatattgtatatatttgtagtagcacgttnnnnnnnnntgttgata |
229 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
27124346 |
tttaagagttaagtatgatcttgtagaattttccatccgttagtagaagaagaaaatattgtatatatttgtagtagcacgttaaaaaaaactgttgata |
27124445 |
T |
|
| Q |
230 |
tagcatcactagtacgtaataatatatacatttatgcttgattattttacatttttgataaatacatttatacttgataggaaacttatattttgagaca |
329 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27124446 |
tagcatcactagtacgtaataatatatacatttatgcttgattattttacatttttgataaatacatttatacttgataggaaacttatattttgagaca |
27124545 |
T |
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| Q |
330 |
atgnnnnnnngtcaatgaatatatggacgatgaatactctactttatatttttaatctatattgttgtttttggccttttctatatctctctg |
422 |
Q |
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| T |
27124546 |
atgtttttttgtcaatgaatatatggacgatgaatactctactttatatttttaatctatattgttgttttttgccttttctatatctctctg |
27124638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 55 - 100
Target Start/End: Complemental strand, 39315053 - 39315008
Alignment:
| Q |
55 |
tcttatttgtgaagtttgaaatattaaaggttttacattgttaata |
100 |
Q |
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| T |
39315053 |
tcttacttgtgaagtttgaaatattaaaagttttacacttttaata |
39315008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 130 - 201
Target Start/End: Original strand, 1156678 - 1156750
Alignment:
| Q |
130 |
tttaagagttaagtatgatcttgtagaattttccatccgttagtag-aagaagaaaatattgtatatatttgt |
201 |
Q |
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|||| ||||||||| ||||||||||||| ||||||| ||||||| || || ||| |||||||||||||||| |
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| T |
1156678 |
tttacgagttaagttagatcttgtagaatcttccatcttttagtagaaaaaataaagtattgtatatatttgt |
1156750 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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