View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1088_low_6 (Length: 481)
Name: NF1088_low_6
Description: NF1088
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1088_low_6 |
 | |
|
| [»] chr8 (7 HSPs) |
| |
|
| [»] scaffold0384 (1 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 347; Significance: 0; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 13 - 481
Target Start/End: Complemental strand, 8724137 - 8723659
Alignment:
| Q |
13 |
aatatgacactaagagaaaa-ggggttcaaaatcaaattttcaaacaatgaatccaaacatcttcaaatttcagaacaacctatcagataagaaatatat |
111 |
Q |
| |
|
||||||||||||| |||||| |||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
8724137 |
aatatgacactaaaagaaaaaggggttcaaaatcaaattttcaaagaatgaatccaatcatcttcaaatttcagaacagcctatcagataagaaatatat |
8724038 |
T |
|
| Q |
112 |
caaatcctgaaaggaaaaa-caca---------atactcatttcatttctagtgattaaagaatattttnnnnnnntgttacatattaaaagcattaaaa |
201 |
Q |
| |
|
||||||||||||| ||||| |||| ||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| |
|
|
| T |
8724037 |
caaatcctgaaagaaaaaaacacatacaatactatactcatttcatttctagtgattaaagaatatttaaaaaaaatgtta-atattaaaagcattaaaa |
8723939 |
T |
|
| Q |
202 |
gttaaaaccttaatgtagcaaaacaaacctggggatcatcaaaggtgacatcatgatactcatgaatgatccaattggtcttaacaccaggaacaggatt |
301 |
Q |
| |
|
||||||||||||||||| ||||||||||||||| ||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
8723938 |
gttaaaaccttaatgtaacaaaacaaacctgggaatcctctaaggtgacatcatgatactcatgaatgatccaattggtcttaacaccaggaacatgatt |
8723839 |
T |
|
| Q |
302 |
ttcatggtaaacaagagtcttcttaatcccaataacttcattggtacccctaatcctaatgttacggtccattccagtagctttccaaaaaccattctta |
401 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
8723838 |
ctcatggtaaacaagagtcttcttaatcccaataacttcattggtacccctaatcctaatgttacggtccattccagtagctttccaaaaaccattatta |
8723739 |
T |
|
| Q |
402 |
gttgtccttttaaaccttttactctttgcatacttgtattcaataggacacaagaaaaaccattcttggtcatcagattt |
481 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
8723738 |
gttgtccttttaaaccttttactctttgcatacttgtattcaatagggcacaagaaaaaccattcttggtcatcagattt |
8723659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 223 - 481
Target Start/End: Complemental strand, 8740558 - 8740300
Alignment:
| Q |
223 |
aacaaacctggggatcatcaaaggtgacatcatgatactcatgaatgatccaattggtcttaacaccaggaacaggattttcatggtaaacaagagtctt |
322 |
Q |
| |
|
||||||||||| ||||||||||| || |||||||||| ||||||||||||||||| |||||||||||||||||||||| |||||| |||||||||||||| |
|
|
| T |
8740558 |
aacaaacctggtgatcatcaaagatggcatcatgatattcatgaatgatccaattagtcttaacaccaggaacaggatcttcatgataaacaagagtctt |
8740459 |
T |
|
| Q |
323 |
cttaatcccaataacttcattggtacccctaatcctaatgttacggtccattccagtagctttccaaaaaccattcttagttgtccttttaaacctttta |
422 |
Q |
| |
|
|||| ||||||||| || ||||||||| |||||| ||||| |||| || ||||||||||||||||||||||||| || ||||||||||||||||||||| |
|
|
| T |
8740458 |
cttagtcccaataattttattggtacctctaatcttaatgctacgatcatttccagtagctttccaaaaaccattattcgttgtccttttaaacctttta |
8740359 |
T |
|
| Q |
423 |
ctctttgcatacttgtattcaataggacacaagaaaaaccattcttggtcatcagattt |
481 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8740358 |
ctctttgcatacttgtattcaataggacacaagaaaaaccattcttggtcatcagattt |
8740300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 203 - 481
Target Start/End: Original strand, 14372225 - 14372503
Alignment:
| Q |
203 |
ttaaaaccttaat-gtagcaaaacaaacctggggatcatcaaaggtgacatcatgatactcatgaatgatccaattggtcttaacaccaggaacaggatt |
301 |
Q |
| |
|
|||||||||| || ||| |||||||||||||| ||| ||||||||| ||||||||| |||||||| | || || | ||||||||||||||| || |
|
|
| T |
14372225 |
ttaaaacctttattgtaacaaaacaaacctggt-atcttcaaaggtggtatcatgatattcatgaatcacccggctgcttttaacaccaggaacacgacc |
14372323 |
T |
|
| Q |
302 |
ttcatggtaaacaagagtcttcttaatcccaataacttcattggtacccctaatcctaatgttacggtccattccagtagctttccaaaaaccattctta |
401 |
Q |
| |
|
| || |||||||||||| |||||||||||||||| | |||| ||||||||| | |||| || |||||| ||||||||||||||||||||||||| || |
|
|
| T |
14372324 |
attatagtaaacaagagttttcttaatcccaataatattattgctacccctaaccttaatcttccggtcctttccagtagctttccaaaaaccatttttt |
14372423 |
T |
|
| Q |
402 |
gttgtccttttaaaccttttactctttgcatacttgtattcaataggacacaagaaaaaccattcttggtcatcagattt |
481 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| ||||| |
|
|
| T |
14372424 |
gttgtccttttaaaccttttactctttgcatacttgtaatcaataggacacaagaaaaaccattctgggtcatctgattt |
14372503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 215 - 481
Target Start/End: Complemental strand, 8705490 - 8705224
Alignment:
| Q |
215 |
tgtagcaaaacaaacctggggatcatcaaaggtgacatcatgatactcatgaatgatccaattggtcttaacaccaggaacaggattttcatggtaaaca |
314 |
Q |
| |
|
|||| |||||||||||| | ||| ||||||||| ||||||||| |||||||| | ||| || | ||||||||||||||| || | | ||||||| |
|
|
| T |
8705490 |
tgtaacaaaacaaaccttgtcatcttcaaaggtggtatcatgatattcatgaatcacccagctgcttttaacaccaggaacacgaccattgtagtaaaca |
8705391 |
T |
|
| Q |
315 |
agagtcttcttaatcccaataacttcattggtacccctaatcctaatgttacggtccattccagtagctttccaaaaaccattcttagttgtccttttaa |
414 |
Q |
| |
|
|||||||||||||||||||||| | |||| ||||||||| | |||| || |||||| | ||||||||||||||||||||| | || |||||||| |||| |
|
|
| T |
8705390 |
agagtcttcttaatcccaataatattattgctacccctaaccttaatcttccggtccttaccagtagctttccaaaaaccagtatttgttgtcctcttaa |
8705291 |
T |
|
| Q |
415 |
accttttactctttgcatacttgtattcaataggacacaagaaaaaccattcttggtcatcagattt |
481 |
Q |
| |
|
||||||||||||| |||||||| || |||||||||||||| |||||||||||| ||||||| ||||| |
|
|
| T |
8705290 |
accttttactcttggcatacttataatcaataggacacaaaaaaaaccattctgggtcatctgattt |
8705224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 40 - 123
Target Start/End: Complemental strand, 8722702 - 8722621
Alignment:
| Q |
40 |
aaaatcaaattttcaaacaatgaatccaaacatcttcaaatttcagaacaacctatcagataagaaatatatcaaatcctgaaa |
123 |
Q |
| |
|
||||||||| ||||||||||| ||||||| ||||||| |||||||||||||| || ||| ||||| |||||||||||||||| |
|
|
| T |
8722702 |
aaaatcaaaatttcaaacaataaatccaataatcttcatatttcagaacaaccaattggat-agaaa-atatcaaatcctgaaa |
8722621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 411 - 466
Target Start/End: Complemental strand, 8738823 - 8738768
Alignment:
| Q |
411 |
ttaaaccttttactctttgcatacttgtattcaataggacacaagaaaaaccattc |
466 |
Q |
| |
|
|||||| ||||||||||||| |||||||| ||| ||||||||||||||||||||| |
|
|
| T |
8738823 |
ttaaactttttactctttgcgtacttgtaatcacaaggacacaagaaaaaccattc |
8738768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 196 - 296
Target Start/End: Complemental strand, 8691229 - 8691129
Alignment:
| Q |
196 |
ttaaaagttaaaaccttaatgtagcaaaacaaacctggggatcatcaaaggtgacatcatgatactcatgaatgatccaattggtcttaacaccaggaac |
295 |
Q |
| |
|
||||||||| |||| || |||| |||||||||||||| ||||| ||||||| || |||||| |||||||| | ||| ||| | |||||||||||||| |
|
|
| T |
8691229 |
ttaaaagtttaaacattgttgtaacaaaacaaacctggttatcatgaaaggtggcagaatgatattcatgaatcacccagttgcttttaacaccaggaac |
8691130 |
T |
|
| Q |
296 |
a |
296 |
Q |
| |
|
| |
|
|
| T |
8691129 |
a |
8691129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0384 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0384
Description:
Target: scaffold0384; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 179 - 243
Target Start/End: Original strand, 7682 - 7746
Alignment:
| Q |
179 |
gttacatattaaaagcattaaaagttaaaaccttaatgtagcaaaacaaacctggggatcatcaa |
243 |
Q |
| |
|
|||| ||||||||| ||||||| | |||||||||||||| |||||||||||| ||||||||||| |
|
|
| T |
7682 |
gttatatattaaaataattaaaaatcaaaaccttaatgtaacaaaacaaacctagggatcatcaa |
7746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University