View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1088_low_9 (Length: 326)
Name: NF1088_low_9
Description: NF1088
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1088_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 157; Significance: 2e-83; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 75 - 235
Target Start/End: Original strand, 39556649 - 39556809
Alignment:
| Q |
75 |
cagagactaatccttttgcgagcggtgctattcgcgtttatcttagagaggttagggagtgtcaagctaaggctaggggtatcccttacaagaagaaaaa |
174 |
Q |
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| T |
39556649 |
cagagactaatcctttcgcgagcggtgctattcgcgtttatcttagagaggttagggagtgtcaagctaaggctaggggtatcccttacaagaagaaaaa |
39556748 |
T |
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| Q |
175 |
gaagagcacaaataagggaaatgatgaatcaagctcaaccatgcacttttcttgaatttcc |
235 |
Q |
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| T |
39556749 |
gaagagcacaaataagggaaatgatgaatcaagctcaaccatgcacttttcttgaatttcc |
39556809 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 136 - 179
Target Start/End: Complemental strand, 32002047 - 32002004
Alignment:
| Q |
136 |
tcaagctaaggctaggggtatcccttacaagaagaaaaagaaga |
179 |
Q |
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| T |
32002047 |
tcaagctaaggctagaggaattccttacaagaagaaaaagaaga |
32002004 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 101 - 179
Target Start/End: Original strand, 4863330 - 4863408
Alignment:
| Q |
101 |
gctattcgcgtttatcttagagaggttagggagtgtcaagctaaggctaggggtatcccttacaagaagaaaaagaaga |
179 |
Q |
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| T |
4863330 |
gctattcgtgtttaccttcgtgaagttaaggagtgtcaatcaaaggctagagggatcccttacacaaagaaaaagaaga |
4863408 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 80 - 185
Target Start/End: Original strand, 30942143 - 30942248
Alignment:
| Q |
80 |
actaatccttttgcgagcggtgctattcgcgtttatcttagagaggttagggagtgtcaagctaaggctaggggtatcccttacaagaagaaaaagaaga |
179 |
Q |
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| T |
30942143 |
actaatccttttgctagtggttccattcgtgtctaccttagggagattagagagtctcaagctaaggctagaggtataccttataagaagaaaaagaaaa |
30942242 |
T |
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| Q |
180 |
gcacaa |
185 |
Q |
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|||||| |
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| T |
30942243 |
gcacaa |
30942248 |
T |
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