View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10890_low_1 (Length: 487)
Name: NF10890_low_1
Description: NF10890
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10890_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 262; Significance: 1e-146; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 34 - 360
Target Start/End: Original strand, 38665436 - 38665777
Alignment:
| Q |
34 |
cataggggtggaaacaaaattactatgcaattgctagatcgggattcaaggaatcatttactgctccacttgagcttcttcaagtcatgtgagtaattat |
133 |
Q |
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| T |
38665436 |
cataggggtggaaacaaaattactatgcaattgctagatcgggattcaaggaatcatttactgctccacttgagcttcttcaagtcatgtgagtaattat |
38665535 |
T |
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| Q |
134 |
ttggtagcacaatgatggatccttctttcaaatctactccttttttactattgttgataagttaaaaaataggttaggtcg------acgttgttgcacg |
227 |
Q |
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| T |
38665536 |
ttggtagctcaatgatggatccttctttcaaatctactccttttttactattgttgataagttagaaaataggttaggtcgaactatatgttgttgcacg |
38665635 |
T |
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| Q |
228 |
tctgactttttatttgttataggcttgtctttaagtctcat-ttttgaaagtcaagtacagattgtacttg--------aactttggaatttatagttta |
318 |
Q |
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| T |
38665636 |
tctgactttttatttgttataggcttgtctttaagtctcatcttttgaaagtcaagtatagattgtacttgacaagataaactttggaatttatagttta |
38665735 |
T |
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| Q |
319 |
taaactcgtattatcaaaagatagtaatttacttgatcgctg |
360 |
Q |
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| T |
38665736 |
taaactcgtattatcaaaagatagcaatttacttgatcgctg |
38665777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 436 - 469
Target Start/End: Original strand, 38665853 - 38665886
Alignment:
| Q |
436 |
cccttaaaaaacaaaacaatttaaatcaaatttg |
469 |
Q |
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| T |
38665853 |
cccttaaaaaacaaaacaatttaaatcaaatttg |
38665886 |
T |
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