View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10890_low_10 (Length: 237)
Name: NF10890_low_10
Description: NF10890
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10890_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 163; Significance: 3e-87; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 41132676 - 41132471
Alignment:
| Q |
1 |
tttcataaaagttgcttaatttttctatcattgaagtaaaatatgtttgagttgtattagtataagtatgatttgacggtgtgagaatttaatagtggtt |
100 |
Q |
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| T |
41132676 |
tttcataaaagttgcttaatttttctatcattgaagtaaaatatgtttgagttgtattagtataagtatgatttcacggtgtgagaatttaatagtggtt |
41132577 |
T |
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| Q |
101 |
atagaatcaaacttaatttccttacaaacttgtgattgaagatgctataagagtttgaaaatcaacctgaatgaagattgaaactccaaagattaaccaa |
200 |
Q |
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| T |
41132576 |
atagaatcaa-----------------acttgtgattgaagatgctataagagtttgaaaatcaacctgaatgaagattgaaactccaaagattaaccaa |
41132494 |
T |
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| Q |
201 |
gtttcggttcaactagctagttg |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
41132493 |
gtttcggttcaactagctagttg |
41132471 |
T |
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Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 52
Target Start/End: Complemental strand, 2875282 - 2875235
Alignment:
| Q |
5 |
ataaaagttgcttaatttttctatcattgaagtaaaatatgtttgagt |
52 |
Q |
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| T |
2875282 |
ataaaagttgcttaattattttatcattgaagaaaaatatgcttgagt |
2875235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 20834636 - 20834584
Alignment:
| Q |
1 |
tttcataaaagttgcttaatttttctatcattgaagtaaaatatgtttgagtt |
53 |
Q |
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|||||||||||||| |||| | |||||| |||| | ||||||||||||||||| |
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| T |
20834636 |
tttcataaaagttgtttaaatgttctattattggaataaaatatgtttgagtt |
20834584 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 50
Target Start/End: Complemental strand, 33780318 - 33780274
Alignment:
| Q |
6 |
taaaagttgcttaatttttctatcattgaagtaaaatatgtttga |
50 |
Q |
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||||||||| |||||||||||||| || |||||||||||| |||| |
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| T |
33780318 |
taaaagttgattaatttttctatcgttaaagtaaaatatgcttga |
33780274 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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