View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10890_low_12 (Length: 211)
Name: NF10890_low_12
Description: NF10890
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10890_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 166; Significance: 5e-89; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 14 - 196
Target Start/End: Original strand, 41283618 - 41283806
Alignment:
| Q |
14 |
aagaatcacctctaatgatgcacgattccctaggatgtataacaccagtgttaggtcgtacaaagtacttagtcggtgaagtggtcttcacct------a |
107 |
Q |
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| T |
41283618 |
aagaatcacctctaatgatgcacgattccctaggatgtataacaccagtgttaggtcgtacaaagtacttagtcggtgaagtggtcttcacctagcaaaa |
41283717 |
T |
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| Q |
108 |
gcaaaagcaaaataatcagtatgaagccatgcactaaagatccagctttctaaaaagaataagtttgtccctgtaaggagagttaaaag |
196 |
Q |
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| T |
41283718 |
gcaaaagcaaaataatcagtatgaagccatgcactaaagatccagctttctaaaaagaataagtttgtccctgtaaggagagttaaaag |
41283806 |
T |
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Target: chr5 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 18 - 111
Target Start/End: Complemental strand, 4206204 - 4206111
Alignment:
| Q |
18 |
atcacctctaatgatgcacgattccctaggatgtataacaccagtgttaggtcgtacaaagtacttagtcggtgaagtggtcttcacctagcaa |
111 |
Q |
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| T |
4206204 |
atcacctctgatgatacatgagtcccaaggatgaataaccccagtgtttggtcgtacaaagtacttctttggtgaagtggttttgacctagcaa |
4206111 |
T |
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