View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10890_low_2 (Length: 415)
Name: NF10890_low_2
Description: NF10890
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10890_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 349; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 20 - 405
Target Start/End: Original strand, 28693359 - 28693740
Alignment:
| Q |
20 |
tactatgagactactttaatttctttcatgccaaacatgtacaacatttttattttgacatatgcctatttgttgatcactttggaacgcctcaatgatt |
119 |
Q |
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| T |
28693359 |
tactctgagactactttaatttctttcatgccaaacatgtacaacatttttattttgacatatgcctatttgttgatcactttggaacgcctcaatgatt |
28693458 |
T |
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| Q |
120 |
agagggttcatgcggttcacataaactaacttgatcttgtattaacaagtggggtgtaccttctaatcgagtaggaggtgtggtcttcacactgatgaat |
219 |
Q |
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| T |
28693459 |
agagggttcatgcggttcacataaactaacttgatcttgtattaacaagtggggtgtaccttctaatcgagtaggaggtgtggtcttcacactgatgaac |
28693558 |
T |
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| Q |
220 |
agattcacttcgactagtcatatgctccttctccaaacaggggaaccagggtatgcttgtccaaataagtaaggtgctggtagatcgatatcaatacaag |
319 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28693559 |
agattcactgcgactagtcatatgctccttctccaaacagggg----agggtatgcttgtccaaataagtaaggtgctggtagatcgatatcaatacaag |
28693654 |
T |
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| Q |
320 |
taaaagtgggatgagtaatatatgtgtgatcatacatgtaaggagacactctatttatagtgatgtatctgatgatgtgctctgtg |
405 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
28693655 |
taaaagtgggatgagtaatatatgtgtgatcatacatgcaaggagacactttatttatagtgatgtatctgatgatgtgctctgtg |
28693740 |
T |
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