View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10890_low_3 (Length: 413)

Name: NF10890_low_3
Description: NF10890
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10890_low_3
NF10890_low_3
[»] chr8 (2 HSPs)
chr8 (115-394)||(35594286-35594565)
chr8 (34-97)||(34615500-34615563)
[»] chr4 (6 HSPs)
chr4 (3-99)||(6842243-6842339)
chr4 (7-100)||(52462349-52462442)
chr4 (63-99)||(46854312-46854348)
chr4 (3-97)||(29322215-29322310)
chr4 (43-97)||(16491292-16491346)
chr4 (3-55)||(46854340-46854391)
[»] scaffold0373 (1 HSPs)
scaffold0373 (3-99)||(3861-3957)
[»] chr2 (1 HSPs)
chr2 (3-99)||(6149523-6149619)
[»] chr3 (1 HSPs)
chr3 (3-97)||(46224714-46224808)
[»] chr1 (1 HSPs)
chr1 (3-97)||(22667885-22667979)
[»] chr6 (1 HSPs)
chr6 (34-97)||(34376867-34376930)


Alignment Details
Target: chr8 (Bit Score: 255; Significance: 1e-142; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 115 - 394
Target Start/End: Complemental strand, 35594565 - 35594286
Alignment:
Q  115 ttataaaaagtaagcttgagcgattttataaatgcaagccaaatcccatggttgatgtgtacacaaaactgacaacacgtggacttttcgttcgcactgt 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35594565 ttataaaaagtaagcttgagcgattttataaatgcaagccaaatcccatggttgatgtgtacacaaaactgacaacacgtggacttttcgttcgcactgt 35594466  T
Q  215 agttgataaaattgagcctcatgtttcatttcataccttgcataataacnnnnnnncctgagcctctagtttcattatctctgagctaaatcatctaaca 314  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||| |||||||||||||||||    
T  35594465 agttgataaaattgagcctcatgtttcatttcataccttgcataataacaaaaaaacctgagcctctagtttcattatctctaagctaaatcatctaaca 35594366  T
Q  315 ttgaagtgtttccactttcttctcttgttccattactctgcagaaagggaacaatggaagctttttctgttagttcactt 394  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35594365 ttgaagtgtttccactttcttctcttgttccattactctgcagaaagggaacaatggaagctttttctgttagttcactt 35594286  T

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Target: chr8; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 34 - 97
Target Start/End: Complemental strand, 34615563 - 34615500
Alignment:
Q  34 gtggaaagagcatcattccactttctttccattccactcctctttctttccttggaaccaaaca 97  Q
    |||||||| ||||||||||||| |||||||||||||| | ||||||||||||||||||||||||    
T  34615563 gtggaaagggcatcattccactctctttccattccacccatctttctttccttggaaccaaaca 34615500  T

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Target: chr4 (Bit Score: 85; Significance: 2e-40; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 3 - 99
Target Start/End: Complemental strand, 6842339 - 6842243
Alignment:
Q  3 tttccttagctttatgaaggtgtgttaaatagtggaaagagcatcattccactttctttccattccactcctctttctttccttggaaccaaacata 99  Q
    ||||||||||||||||||||||||| ||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  6842339 tttccttagctttatgaaggtgtgtcaaacagtggaaagagcatcattccactctctttccattccactcctctttctttccttggaaccaaacata 6842243  T

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Target: chr4; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 7 - 100
Target Start/End: Original strand, 52462349 - 52462442
Alignment:
Q  7 cttagctttatgaaggtgtgttaaatagtggaaagagcatcattccactttctttccattccactcctctttctttccttggaaccaaacatat 100  Q
    |||||||||||||||||||   ||| ||| ||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||    
T  52462349 cttagctttatgaaggtgtaccaaacagtagaaagagcatcattccactctctttccattccactcctctttctttcgttggaaccaaacatat 52462442  T

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Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 63 - 99
Target Start/End: Complemental strand, 46854348 - 46854312
Alignment:
Q  63 cattccactcctctttctttccttggaaccaaacata 99  Q
    |||||||||||||||||||||||||||||||||||||    
T  46854348 cattccactcctctttctttccttggaaccaaacata 46854312  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 3 - 97
Target Start/End: Complemental strand, 29322310 - 29322215
Alignment:
Q  3 tttccttagcttta-tgaaggtgtgttaaatagtggaaagagcatcattccactttctttccattccactcctctttctttccttggaaccaaaca 97  Q
    |||||||||||||  ||||||||||| |||   |||||||  |||||||||||| |||||||  |||||||  |||||||||| ||||| ||||||    
T  29322310 tttccttagcttttgtgaaggtgtgtcaaactatggaaaggacatcattccactctctttcccatccactcacctttctttccatggaatcaaaca 29322215  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 43 - 97
Target Start/End: Complemental strand, 16491346 - 16491292
Alignment:
Q  43 gcatcattccactttctttccattccactcctctttctttccttggaaccaaaca 97  Q
    ||||||||||||| ||||| ||| || ||| ||||||||||| ||||||||||||    
T  16491346 gcatcattccactctcttttcatccccctcatctttctttccatggaaccaaaca 16491292  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 46854391 - 46854340
Alignment:
Q  3 tttccttagctttatgaaggtgtgttaaatagtggaaagagcatcattccact 55  Q
    |||||||||||| |||||||||||  ||| ||| |||||||||||||||||||    
T  46854391 tttccttagctt-atgaaggtgtgccaaacagtagaaagagcatcattccact 46854340  T

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Target: scaffold0373 (Bit Score: 81; Significance: 5e-38; HSPs: 1)
Name: scaffold0373
Description:

Target: scaffold0373; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 3 - 99
Target Start/End: Original strand, 3861 - 3957
Alignment:
Q  3 tttccttagctttatgaaggtgtgttaaatagtggaaagagcatcattccactttctttccattccactcctctttctttccttggaaccaaacata 99  Q
    |||||||| |||||||||||||||| ||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  3861 tttccttaactttatgaaggtgtgtcaaacagtggaaagagcatcattccactctctttccattccactcctctttctttccttggaaccaaacata 3957  T

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Target: chr2 (Bit Score: 69; Significance: 8e-31; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 3 - 99
Target Start/End: Complemental strand, 6149619 - 6149523
Alignment:
Q  3 tttccttagctttatgaaggtgtgttaaatagtggaaagagcatcattccactttctttccattccactcctctttctttccttggaaccaaacata 99  Q
    |||||||| |||||||||||||||  ||| ||||||||||  ||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  6149619 tttccttaactttatgaaggtgtgccaaacagtggaaagaatatcattccactctctttccattccactcctctttctttccttggaaccaaacata 6149523  T

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Target: chr3 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 3 - 97
Target Start/End: Original strand, 46224714 - 46224808
Alignment:
Q  3 tttccttagctttatgaaggtgtgttaaatagtggaaagagcatcattccactttctttccattccactcctctttctttccttggaaccaaaca 97  Q
    ||||||||||||| |||||||||   |||  |||||||| ||||||||||||| ||||| |||||||| | ||||||||||||||||||||||||    
T  46224714 tttccttagctttgtgaaggtgttccaaacggtggaaagggcatcattccactctcttttcattccacccatctttctttccttggaaccaaaca 46224808  T

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Target: chr1 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 3 - 97
Target Start/End: Complemental strand, 22667979 - 22667885
Alignment:
Q  3 tttccttagctttatgaaggtgtgttaaatagtggaaagagcatcattccactttctttccattccactcctctttctttccttggaaccaaaca 97  Q
    ||||| ||||||| |||||||||   |||  |||||||| ||||||||||||| |||||||||||||  | ||||||||||||||||||||||||    
T  22667979 tttccatagctttgtgaaggtgttccaaacggtggaaagggcatcattccactctctttccattccatccatctttctttccttggaaccaaaca 22667885  T

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Target: chr6 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 34 - 97
Target Start/End: Complemental strand, 34376930 - 34376867
Alignment:
Q  34 gtggaaagagcatcattccactttctttccattccactcctctttctttccttggaaccaaaca 97  Q
    |||||||| ||||||||||||| |||||||||||||  | ||||||||||||||||||||||||    
T  34376930 gtggaaagggcatcattccactctctttccattccatccatctttctttccttggaaccaaaca 34376867  T

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