View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10890_low_4 (Length: 394)
Name: NF10890_low_4
Description: NF10890
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10890_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 246; Significance: 1e-136; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 125 - 378
Target Start/End: Original strand, 7078253 - 7078506
Alignment:
| Q |
125 |
tgtgatgaatcaaatccagaaatattagcagattgcttcaaagcagatctccaccttagcaccttgtaagaactataattttgttcatgttgagcaaaag |
224 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
7078253 |
tgtgatgaatcaaatccagaaatatttgcagattgcttcaaagcagatctccaccttagaaccttgtaagaactataattttgttcatgttgagcaaaag |
7078352 |
T |
|
| Q |
225 |
catctctataaatcccattttggtaccttacaactgtgggctctacttggtagaaaactggcattagaatcctaccatatttttctctacactcaactat |
324 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7078353 |
catctctataaatcccattttggtaccttacaactgtgggctctacttggtagaaaactggcattagaatcctaccatatttttctctacactcaactat |
7078452 |
T |
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| Q |
325 |
tttcacaagctcctccatacaccaatatgaagatgcaaagtttggagagaatat |
378 |
Q |
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| T |
7078453 |
tttcacaagctcctccatacaccaatatgaagatgcaaagtttggagagaatat |
7078506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 126 - 378
Target Start/End: Complemental strand, 7028974 - 7028722
Alignment:
| Q |
126 |
gtgatgaatcaaatccagaaatattagcagattgcttcaaagcagatctccaccttagcaccttgtaagaactataattttgttcatgttgagcaaaagc |
225 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| |||||||| ||||||||||||||||||||||| |
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| T |
7028974 |
gtgatgaatcaaatccagacatattagcagattgcttcaaagcagatctccagcttagcaccttgtaggaactatacttttgttcatgttgagcaaaagc |
7028875 |
T |
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| Q |
226 |
atctctataaatcccattttggtaccttacaactgtgggctctacttggtagaaaactggcattagaatcctaccatatttttctctacactcaactatt |
325 |
Q |
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| T |
7028874 |
atctctataagtcccattttgatgccgtacatctgagggatatacttggtagaaaactggcattagaaccctaccataatttgctctgcactcgactatt |
7028775 |
T |
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| Q |
326 |
ttcacaagctcctccatacaccaatatgaagatgcaaagtttggagagaatat |
378 |
Q |
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| T |
7028774 |
ttcacaagctcgtccaaacaccaatgtgaagatgcaaagtttggagaaaatat |
7028722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 146; E-Value: 8e-77
Query Start/End: Original strand, 125 - 378
Target Start/End: Complemental strand, 7035677 - 7035424
Alignment:
| Q |
125 |
tgtgatgaatcaaatccagaaatattagcagattgcttcaaagcagatctccaccttagcaccttgtaagaactataattttgttcatgttgagcaaaag |
224 |
Q |
| |
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|||||||||||||||||||| ||||| |||||||||||||||||| ||||||| ||||||||||| | || |||| |||||||||||||||||||||| |
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| T |
7035677 |
tgtgatgaatcaaatccagacatattggcagattgcttcaaagcatatctccaacttagcaccttattcaaattatacttttgttcatgttgagcaaaag |
7035578 |
T |
|
| Q |
225 |
catctctataaatcccattttggtaccttacaactgtgggctctacttggtagaaaactggcattagaatcctaccatatttttctctacactcaactat |
324 |
Q |
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||||||||||| |||||||||| | || |||| ||| |||||||||||||||||||||||||| ||||||||| ||||| ||| |||| ||||| ||||| |
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| T |
7035577 |
catctctataactcccattttgatgccgtacatctgagggctctacttggtagaaaactggcaatagaatcctgccataatttgctctgcactcgactat |
7035478 |
T |
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| Q |
325 |
tttcacaagctcctccatacaccaatatgaagatgcaaagtttggagagaatat |
378 |
Q |
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|||||||||||| |||| |||||||| |||||||||||||||||| || ||||| |
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| T |
7035477 |
tttcacaagctcatccaaacaccaatgtgaagatgcaaagtttggtgaaaatat |
7035424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 130 - 378
Target Start/End: Complemental strand, 7021367 - 7021119
Alignment:
| Q |
130 |
tgaatcaaatccagaaatattagcagattgcttcaaagcagatctccaccttagcaccttgtaagaactataattttgttcatgttgagcaaaagcatct |
229 |
Q |
| |
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||||| ||||||||||||||| ||||||| |||||||| ||||||| || |||||||| |||||| |||||||| || ||||| ||||||||||| |
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| T |
7021367 |
tgaatgaaatccagaaatattggcagattttgtcaaagcatgtctccacttttccaccttgtcggaactaaaattttgtccaagttgaacaaaagcatct |
7021268 |
T |
|
| Q |
230 |
ctataaatcccattttggtaccttacaactgtgggctctacttggtagaaaactggcattagaatcctaccatatttttctctacactcaactattttca |
329 |
Q |
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||||| ||| |||| | | ||| |||| || |||||||||||||||||||||| |||||||||| |||||||| |||| || ||||||||||||| |
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| T |
7021267 |
ttataagcaccagtttgatgtcgtacttctgtaggatctacttggtagaaaactggcaatagaatcctatcatattttgctctgcaatcaactattttca |
7021168 |
T |
|
| Q |
330 |
caagctcctccatacaccaatatgaagatgcaaagtttggagagaatat |
378 |
Q |
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||||||| |||| |||||||| |||| ||| |||||||||||||||||| |
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| T |
7021167 |
caagctcatccaaacaccaatgtgaatatgaaaagtttggagagaatat |
7021119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 203 - 378
Target Start/End: Original strand, 7069807 - 7069982
Alignment:
| Q |
203 |
ttttgttcatgttgagcaaaagcatctctataaatcccattttggtaccttacaactgtgggctctacttggtagaaaactggcattagaatcctaccat |
302 |
Q |
| |
|
||||||||||||| | |||| |||||| |||| | |||||||| | ||| |||| |||||| || |||| ||||||||| |||| || ||| | |||| |
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| T |
7069807 |
ttttgttcatgttcaacaaatgcatctgcataagttccattttgatgcctcacaattgtgggatcaactttgtagaaaacaggcaataaaatgtttccat |
7069906 |
T |
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| Q |
303 |
atttttctctacactcaactattttcacaagctcctccatacaccaatatgaagatgcaaagtttggagagaatat |
378 |
Q |
| |
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||| |||||||| ||||| | ||| || ||||| |||| ||||||| ||||||| ||| ||||| |||||||||| |
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| T |
7069907 |
ctttctctctacagtcaacaactttgaccagctcatccaaacaccaagatgaagaagcatagttttgagagaatat |
7069982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 6 - 60
Target Start/End: Original strand, 7078132 - 7078187
Alignment:
| Q |
6 |
tggagaagcagagaaa-agatgaagagacacattaacttttttaatttgttcaatc |
60 |
Q |
| |
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|||||||||||| ||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
7078132 |
tggagaagcagaaaaagagatgaagagacacattaacttttttaatttgttcaatc |
7078187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 203 - 378
Target Start/End: Original strand, 7086873 - 7087048
Alignment:
| Q |
203 |
ttttgttcatgttgagcaaaagcatctctataaatcccattttggtaccttacaactgtgggctctacttggtagaaaactggcattagaatcctaccat |
302 |
Q |
| |
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||||||||||||| ||||| |||| | |||| |||| || || | ||| |||||||| || || |||| ||| ||||| |||| || |||| |||| |
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| T |
7086873 |
ttttgttcatgttctgcaaatgcatttgcataagtccccttctgatgcctcacaactgtagggtcaactttgtaaaaaacaggcaataaaatctgtccat |
7086972 |
T |
|
| Q |
303 |
atttttctctacactcaactattttcacaagctcctccatacaccaatatgaagatgcaaagtttggagagaatat |
378 |
Q |
| |
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||| |||||||||||||| ||||| |||||||| |||| |||||| | |||||| ||| ||||| |||||||||| |
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| T |
7086973 |
ctttctctctacactcaacaattttgacaagctcatccaaacaccattttgaagaagcatagttttgagagaatat |
7087048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 125 - 178
Target Start/End: Original strand, 7100407 - 7100460
Alignment:
| Q |
125 |
tgtgatgaatcaaatccagaaatattagcagattgcttcaaagcagatctccac |
178 |
Q |
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|||||||||| ||| ||||| |||| ||||||| ||||||||||||||||||| |
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| T |
7100407 |
tgtgatgaatgaaaaccagagatatctgcagatttcttcaaagcagatctccac |
7100460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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