View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10890_low_5 (Length: 380)

Name: NF10890_low_5
Description: NF10890
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10890_low_5
NF10890_low_5
[»] chr4 (2 HSPs)
chr4 (8-361)||(22085413-22085766)
chr4 (45-250)||(30518166-30518371)
[»] chr2 (3 HSPs)
chr2 (39-270)||(40040686-40040917)
chr2 (48-253)||(38895872-38896077)
chr2 (39-208)||(42898195-42898364)
[»] chr7 (2 HSPs)
chr7 (111-268)||(40749359-40749516)
chr7 (135-250)||(44150818-44150933)
[»] chr8 (2 HSPs)
chr8 (66-250)||(5788741-5788925)
chr8 (44-267)||(33186637-33186860)
[»] chr1 (8 HSPs)
chr1 (54-270)||(28496104-28496320)
chr1 (131-253)||(12804526-12804648)
chr1 (130-269)||(36989328-36989467)
chr1 (111-268)||(12774906-12775063)
chr1 (99-270)||(31644056-31644227)
chr1 (141-253)||(42287116-42287228)
chr1 (141-250)||(4160376-4160485)
chr1 (135-268)||(50788819-50788952)
[»] chr3 (1 HSPs)
chr3 (130-254)||(52248369-52248493)


Alignment Details
Target: chr4 (Bit Score: 350; Significance: 0; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 8 - 361
Target Start/End: Complemental strand, 22085766 - 22085413
Alignment:
Q  8 gaagcagagagcaaacaaagatcaaattcgaaagaaggtttatgtgtgtcctgagaagacttgtgtgcaccatgaaccttctagagctttgggagatttg 107  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22085766 gaagcaaagagcaaacaaagatcaaattcgaaagaaggtttatgtgtgtcctgagaagacttgtgtgcaccatgaaccttctagagctttgggagatttg 22085667  T
Q  108 acaggaataaagaaacattatagtagaaaacatggtgagaagaagtggaagtgtgaaaagtgttccaagaaatatgcagttcaatctgattggaaagctc 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22085666 acaggaataaagaaacattatagtagaaaacatggtgagaagaagtggaagtgtgaaaagtgttccaagaaatatgcagttcaatctgattggaaagctc 22085567  T
Q  208 atagcaagatttgtggaactagagagtacaaatgtgattgtggcacaattttctccaggtatatactatatatttactatctttcgccatagcagtcact 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22085566 atagcaagatttgtggaactagagagtacaaatgtgattgtggcacaattttctccaggtatatactatatatttactatctttcgccatagcagtcact 22085467  T
Q  308 actggcaccgttggatttgagatagaaacaatttacattttctaaactcggatc 361  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22085466 actggcaccgttggatttgagatagaaacaatttacattttctaaactcggatc 22085413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 45 - 250
Target Start/End: Complemental strand, 30518371 - 30518166
Alignment:
Q  45 gtttatgtgtgtcctgagaagacttgtgtgcaccatgaaccttctagagctttgggagatttgacaggaataaagaaacattatagtagaaaacatggtg 144  Q
    |||||||||||||| ||||| |||||||| |||||||| ||||| || ||  | || || || || || ||||| || || | | ||||||| |||||||    
T  30518371 gtttatgtgtgtccagagaaaacttgtgtccaccatgatccttcaagggcacttggtgacttaactgggataaaaaagcacttttgtagaaagcatggtg 30518272  T
Q  145 agaagaagtggaagtgtgaaaagtgttccaagaaatatgcagttcaatctgattggaaagctcatagcaagatttgtggaactagagagtacaaatgtga 244  Q
    | ||||||||||||||||| ||||| || ||    ||||| ||||| || ||||||||||||||    || |  ||||| |||||||| |||||||||||    
T  30518271 aaaagaagtggaagtgtgagaagtgctcaaaacgttatgctgttcagtcagattggaaagctcactcaaaaacatgtggtactagagaatacaaatgtga 30518172  T
Q  245 ttgtgg 250  Q
     |||||    
T  30518171 ctgtgg 30518166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 108; Significance: 4e-54; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 39 - 270
Target Start/End: Original strand, 40040686 - 40040917
Alignment:
Q  39 aagaaggtttatgtgtgtcctgagaagacttgtgtgcaccatgaaccttctagagctttgggagatttgacaggaataaagaaacattatagtagaaaac 138  Q
    ||||| || ||||| ||||| || ||||  || ||||||||||| |||  ||||||| | |||||  ||||||| ||||| || || | ||||||||| |    
T  40040686 aagaaagtgtatgtttgtccagaaaagagctgcgtgcaccatgaccctagtagagctctaggagacctgacagggataaaaaagcactttagtagaaagc 40040785  T
Q  139 atggtgagaagaagtggaagtgtgaaaagtgttccaagaaatatgcagttcaatctgattggaaagctcatagcaagatttgtggaactagagagtacaa 238  Q
    | ||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| |||||||| ||||||||||| |||| ||||||||     
T  40040786 acggtgagaagaagtggaagtgtgataagtgttctaagaaatatgcagttcaatctgattggaaggctcatagtaagatttgtggcactaaagagtacag 40040885  T
Q  239 atgtgattgtggcacaattttctccaggtata 270  Q
    |||||||||||||||| | |||||||||||||    
T  40040886 atgtgattgtggcacactattctccaggtata 40040917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 48 - 253
Target Start/End: Complemental strand, 38896077 - 38895872
Alignment:
Q  48 tatgtgtgtcctgagaagacttgtgtgcaccatgaaccttctagagctttgggagatttgacaggaataaagaaacattatagtagaaaacatggtgaga 147  Q
    ||||||||||| |||||||| ||||| ||  || | ||||| || |||||||||||||| || || |||||||| || | | |||| ||||| |||||||    
T  38896077 tatgtgtgtccagagaagacatgtgttcataatcatccttcaagggctttgggagatttaactgggataaagaagcacttttgtaggaaacacggtgaga 38895978  T
Q  148 agaagtggaagtgtgaaaagtgttccaagaaatatgcagttcaatctgattggaaagctcatagcaagatttgtggaactagagagtacaaatgtgattg 247  Q
    |||||||||||||||| ||||| || ||    ||||| |||||||| ||||||||||| ||    |||| |||||| |||||||| ||||||||||||||    
T  38895977 agaagtggaagtgtgagaagtgctcaaaattttatgctgttcaatcggattggaaagcacactcaaagacttgtggtactagagaatacaaatgtgattg 38895878  T
Q  248 tggcac 253  Q
    ||||||    
T  38895877 tggcac 38895872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 39 - 208
Target Start/End: Original strand, 42898195 - 42898364
Alignment:
Q  39 aagaaggtttatgtgtgtcctgagaagacttgtgtgcaccatgaaccttctagagctttgggagatttgacaggaataaagaaacattatagtagaaaac 138  Q
    ||||| |||||||||||||| ||    ||||||||||||||||| || || ||||| ||||| ||  | || || || ||||| || |   | ||||| |    
T  42898195 aagaaagtttatgtgtgtccagaaccaacttgtgtgcaccatgacccatcaagagccttgggggacctaactggtatcaagaagcacttctgcagaaagc 42898294  T
Q  139 atggtgagaagaagtggaagtgtgaaaagtgttccaagaaatatgcagttcaatctgattggaaagctca 208  Q
    | ||||||||||||||||| ||||| ||||| || ||||| |||||||||||||| || |||||||||||    
T  42898295 acggtgagaagaagtggaaatgtgacaagtgctctaagaagtatgcagttcaatcagactggaaagctca 42898364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 86; Significance: 5e-41; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 111 - 268
Target Start/End: Original strand, 40749359 - 40749516
Alignment:
Q  111 ggaataaagaaacattatagtagaaaacatggtgagaagaagtggaagtgtgaaaagtgttccaagaaatatgcagttcaatctgattggaaagctcata 210  Q
    |||||||||||||||| ||||||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |    
T  40749359 ggaataaagaaacattttagtagaaaacatggcgagaagaaatggaagtgtgataagtgttccaagaaatatgcagtccaatctgattggaaagctcaca 40749458  T
Q  211 gcaagatttgtggaactagagagtacaaatgtgattgtggcacaattttctccaggta 268  Q
      || | |||||| |||||||| || || ||||||||||| ||| | ||||| |||||    
T  40749459 ctaaaacttgtggtactagagaatataagtgtgattgtggtacactcttctcaaggta 40749516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 135 - 250
Target Start/End: Complemental strand, 44150933 - 44150818
Alignment:
Q  135 aaacatggtgagaagaagtggaagtgtgaaaagtgttccaagaaatatgcagttcaatctgattggaaagctcatagcaagatttgtggaactagagagt 234  Q
    ||||||||||||||||| ||||| ||||| ||||| || || | |||||| |||||||| |||||||| |||||    || | |||||| ||||| || |    
T  44150933 aaacatggtgagaagaaatggaaatgtgacaagtgctctaaaagatatgctgttcaatcagattggaaggctcaccagaaaacttgtggtactagggaat 44150834  T
Q  235 acaaatgtgattgtgg 250  Q
    ||||||||||||||||    
T  44150833 acaaatgtgattgtgg 44150818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 77; Significance: 1e-35; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 66 - 250
Target Start/End: Complemental strand, 5788925 - 5788741
Alignment:
Q  66 acttgtgtgcaccatgaaccttctagagctttgggagatttgacaggaataaagaaacattatagtagaaaacatggtgagaagaagtggaagtgtgaaa 165  Q
    ||||||||||| ||||| || || ||||| || || |||||||| ||||| |||||||| | |   ||||| |||||||||||||||||||| |||||||    
T  5788925 acttgtgtgcatcatgatccatcaagagcattaggggatttgactggaatcaagaaacacttttccagaaagcatggtgagaagaagtggaaatgtgaaa 5788826  T
Q  166 agtgttccaagaaatatgcagttcaatctgattggaaagctcatagcaagatttgtggaactagagagtacaaatgtgattgtgg 250  Q
    ||||||| ||||||||||| ||||||||||||||||||||||||  ||| | |||||| |||||||| || | |||||| |||||    
T  5788825 agtgttcaaagaaatatgctgttcaatctgattggaaagctcattccaaaacttgtggcactagagaatatagatgtgactgtgg 5788741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 44 - 267
Target Start/End: Original strand, 33186637 - 33186860
Alignment:
Q  44 ggtttatgtgtgtcctgagaagacttgtgtgcaccatgaaccttctagagctttgggagatttgacaggaataaagaaacattatagtagaaaacatggt 143  Q
    ||||||||| ||||||||    |||||||| || ||||| |||||||||||||| || ||||| || || ||||| || || | | ||||||||||||||    
T  33186637 ggtttatgtttgtcctgaacctacttgtgttcatcatgatccttctagagctttaggtgatttaactgggataaaaaagcacttttgtagaaaacatggt 33186736  T
Q  144 gagaagaagtggaagtgtgaaaagtgttccaagaaatatgcagttcaatctgattggaaagctcatagcaagatttgtggaactagagagtacaaatgtg 243  Q
    ||||| |||||||| ||||| || ||||| ||||||||||| |||||||||||||||||||||||    ||  |||||||  |||||||||| |||||||    
T  33186737 gagaaaaagtggaaatgtgagaaatgttctaagaaatatgctgttcaatctgattggaaagctcactctaaagtttgtggttctagagagtataaatgtg 33186836  T
Q  244 attgtggcacaattttctccaggt 267  Q
    ||||||| ||  |||| |||||||    
T  33186837 attgtggaaccgttttttccaggt 33186860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 73; Significance: 3e-33; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 54 - 270
Target Start/End: Complemental strand, 28496320 - 28496104
Alignment:
Q  54 tgtcctgagaagacttgtgtgcaccatgaaccttctagagctttgggagatttgacaggaataaagaaacattatagtagaaaacatggtgagaagaagt 153  Q
    ||||| |||||||| ||||| |||||||| ||||| |||||  | || ||  | ||||| ||||| || || | ||||||||| || |||||||||||||    
T  28496320 tgtccagagaagacctgtgtccaccatgacccttcaagagcacttggtgacctcacaggtataaaaaagcactttagtagaaagcacggtgagaagaagt 28496221  T
Q  154 ggaagtgtgaaaagtgttccaagaaatatgcagttcaatctgattggaaagctcatagcaagatttgtggaactagagagtacaaatgtgattgtggcac 253  Q
    |||| |||||||| |||||||| ||||||||||| ||||||||||||||||||||||  || |  ||||| || ||||| ||||||||||| ||||||||    
T  28496220 ggaaatgtgaaaaatgttccaaaaaatatgcagtccaatctgattggaaagctcatacaaaaacatgtggtacaagagaatacaaatgtgactgtggcac 28496121  T
Q  254 aattttctccaggtata 270  Q
      | ||||| |||||||    
T  28496120 cctcttctcaaggtata 28496104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 131 - 253
Target Start/End: Complemental strand, 12804648 - 12804526
Alignment:
Q  131 tagaaaacatggtgagaagaagtggaagtgtgaaaagtgttccaagaaatatgcagttcaatctgattggaaagctcatagcaagatttgtggaactaga 230  Q
    |||||| ||||||||||| |||||||| |||||||||||||| ||||||||||| ||||||||||||||||||||||||   |||| |||||| |||||     
T  12804648 tagaaagcatggtgagaaaaagtggaaatgtgaaaagtgttctaagaaatatgctgttcaatctgattggaaagctcattctaagacttgtggtactagg 12804549  T
Q  231 gagtacaaatgtgattgtggcac 253  Q
    ||||| | |||||| ||||||||    
T  12804548 gagtatagatgtgactgtggcac 12804526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 130 - 269
Target Start/End: Original strand, 36989328 - 36989467
Alignment:
Q  130 gtagaaaacatggtgagaagaagtggaagtgtgaaaagtgttccaagaaatatgcagttcaatctgattggaaagctcatagcaagatttgtggaactag 229  Q
    ||||||| ||||||||||| |||||||| ||||| |||||||| ||||||||||| ||||||||||||||||||||||||  ||| || ||||| || ||    
T  36989328 gtagaaagcatggtgagaaaaagtggaaatgtgataagtgttctaagaaatatgctgttcaatctgattggaaagctcattccaaaatatgtggtacaag 36989427  T
Q  230 agagtacaaatgtgattgtggcacaattttctccaggtat 269  Q
     || ||||||||||| ||||| || || || |||||||||    
T  36989428 ggaatacaaatgtgactgtggaaccatcttttccaggtat 36989467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 111 - 268
Target Start/End: Original strand, 12774906 - 12775063
Alignment:
Q  111 ggaataaagaaacattatagtagaaaacatggtgagaagaagtggaagtgtgaaaagtgttccaagaaatatgcagttcaatctgattggaaagctcata 210  Q
    ||||| |||||||| |||  |||||| ||||||||||| || |||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||     
T  12774906 ggaattaagaaacactattttagaaagcatggtgagaaaaaatggaagtgtgaaaagtgttctaagaagtatgctgttcaatctgattggaaagctcatt 12775005  T
Q  211 gcaagatttgtggaactagagagtacaaatgtgattgtggcacaattttctccaggta 268  Q
      || | |||||| ||||  ||||| | |||||| ||||||||  | |||||||||||    
T  12775006 ctaaaacttgtggtactaaggagtatagatgtgactgtggcactctcttctccaggta 12775063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 99 - 270
Target Start/End: Complemental strand, 31644227 - 31644056
Alignment:
Q  99 ggagatttgacaggaataaagaaacattatagtagaaaacatggtgagaagaagtggaagtgtgaaaagtgttccaagaaatatgcagttcaatctgatt 198  Q
    |||||| | |||||||| |||||||||||||||||||||||||||||||| || ||||| ||||| ||||| || ||||  ||||| ||||| |||||||    
T  31644227 ggagatcttacaggaattaagaaacattatagtagaaaacatggtgagaaaaaatggaaatgtgataagtgctcaaagatctatgctgttcattctgatt 31644128  T
Q  199 ggaaagctcatagcaagatttgtggaactagagagtacaaatgtgattgtggcacaattttctccaggtata 270  Q
    ||||||||||    || |  ||||| ||| |||| || |||||||||||||| ||  |||| ||||||||||    
T  31644127 ggaaagctcactctaaaacctgtggtactcgagaatataaatgtgattgtggtacccttttttccaggtata 31644056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 141 - 253
Target Start/End: Original strand, 42287116 - 42287228
Alignment:
Q  141 ggtgagaagaagtggaagtgtgaaaagtgttccaagaaatatgcagttcaatctgattggaaagctcatagcaagatttgtggaactagagagtacaaat 240  Q
    ||||||||||||||||| |||||||| || || ||||||||||| ||||||||||| |||||||| |||   |||| |||||| |||||||| || | ||    
T  42287116 ggtgagaagaagtggaaatgtgaaaaatgctcaaagaaatatgctgttcaatctgactggaaagcacattctaagacttgtggtactagagaatatagat 42287215  T
Q  241 gtgattgtggcac 253  Q
    |||||||||||||    
T  42287216 gtgattgtggcac 42287228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 141 - 250
Target Start/End: Original strand, 4160376 - 4160485
Alignment:
Q  141 ggtgagaagaagtggaagtgtgaaaagtgttccaagaaatatgcagttcaatctgattggaaagctcatagcaagatttgtggaactagagagtacaaat 240  Q
    ||||||||||||||||||||||| || ||||| ||   |||||||||||| || |||||||||||||||  ||| |||||||| |||| |||||| || |    
T  4160376 ggtgagaagaagtggaagtgtgagaaatgttctaaacgatatgcagttcagtcggattggaaagctcattccaaaatttgtggcactaaagagtataagt 4160475  T
Q  241 gtgattgtgg 250  Q
    |||| |||||    
T  4160476 gtgactgtgg 4160485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 135 - 268
Target Start/End: Complemental strand, 50788952 - 50788819
Alignment:
Q  135 aaacatggtgagaagaagtggaagtgtgaaaagtgttccaagaaatatgcagttcaatctgattggaaagctcatagcaagatttgtggaactagagagt 234  Q
    ||||||||||||||||| ||||||||||| ||||| || ||||| ||||| ||||||||||||||||| || |||   |||| |||||| || ||||| |    
T  50788952 aaacatggtgagaagaaatggaagtgtgataagtgctctaagaagtatgctgttcaatctgattggaaggcacattctaagacttgtggcaccagagaat 50788853  T
Q  235 acaaatgtgattgtggcacaattttctccaggta 268  Q
    | |  ||||| ||||||||  | |||||||||||    
T  50788852 ataggtgtgactgtggcactctcttctccaggta 50788819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 130 - 254
Target Start/End: Complemental strand, 52248493 - 52248369
Alignment:
Q  130 gtagaaaacatggtgagaagaagtggaagtgtgaaaagtgttccaagaaatatgcagttcaatctgattggaaagctcatagcaagatttgtggaactag 229  Q
    ||||||| |||||||||||||| ||||| ||||||   ||||| || ||||| || |   ||| ||||| ||||| |||||  ||||  |||||||||||    
T  52248493 gtagaaagcatggtgagaagaaatggaaatgtgaacgttgttctaaaaaatacgctgcgaaatgtgatttgaaagttcatatgaagagctgtggaactag 52248394  T
Q  230 agagtacaaatgtgattgtggcaca 254  Q
    |||||| ||||||||||||||||||    
T  52248393 agagtataaatgtgattgtggcaca 52248369  T

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