View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10890_low_6 (Length: 316)

Name: NF10890_low_6
Description: NF10890
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10890_low_6
NF10890_low_6
[»] chr8 (7 HSPs)
chr8 (21-244)||(38300646-38300869)
chr8 (21-244)||(38309293-38309516)
chr8 (25-244)||(38321395-38321614)
chr8 (25-244)||(38317300-38317519)
chr8 (25-229)||(38326145-38326349)
chr8 (42-244)||(38306564-38306766)
chr8 (34-208)||(38313898-38314072)
[»] chr4 (1 HSPs)
chr4 (37-244)||(38849817-38850033)


Alignment Details
Target: chr8 (Bit Score: 224; Significance: 1e-123; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 21 - 244
Target Start/End: Original strand, 38300646 - 38300869
Alignment:
Q  21 ccaaggattaagctttcaacattggctaattgttactcaaaacttgatgcatcaacacgtgaaaggaagttgcaacaagtaaagagcaagttgtacatgc 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38300646 ccaaggattaagctttcaacattggctaattgttactcaaaacttgatgcatcaacacgtgaaaggaagttgcaacaagtaaagagcaagttgtacatgc 38300745  T
Q  121 tatttgacaagtattctagcaaaagtactccttcttgcgtgcaaagaattatccaggaccaatcttctagcatgccatttcaagagaagttaaactcttt 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38300746 tatttgacaagtattctagcaaaagtactccttcttgcgtgcaaagaattatccaggaccaatcttctagcatgccatttcaagagaagttaaactcttt 38300845  T
Q  221 atctgacggcctatttgatgtaag 244  Q
    ||||||||||||||||||||||||    
T  38300846 atctgacggcctatttgatgtaag 38300869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 21 - 244
Target Start/End: Original strand, 38309293 - 38309516
Alignment:
Q  21 ccaaggattaagctttcaacattggctaattgttactcaaaacttgatgcatcaacacgtgaaaggaagttgcaacaagtaaagagcaagttgtacatgc 120  Q
    |||||||| |||||||| ||||||||| ||||||||||||||||| ||||||||||  | |||||||||||||| |||||||||||||||||||||||||    
T  38309293 ccaaggataaagctttccacattggcttattgttactcaaaacttaatgcatcaacctgcgaaaggaagttgcagcaagtaaagagcaagttgtacatgc 38309392  T
Q  121 tatttgacaagtattctagcaaaagtactccttcttgcgtgcaaagaattatccaggaccaatcttctagcatgccatttcaagagaagttaaactcttt 220  Q
    ||||| ||||| ||||| ||||||||||| ||||| ||||||||||||  || |||||||||||||||||  ||||||| ||| |||||||||| |||||    
T  38309393 tatttcacaagaattcttgcaaaagtacttcttctggcgtgcaaagaacaattcaggaccaatcttctagtgtgccattgcaaaagaagttaaagtcttt 38309492  T
Q  221 atctgacggcctatttgatgtaag 244  Q
    |||| | |||||||||||||||||    
T  38309493 atctcagggcctatttgatgtaag 38309516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 25 - 244
Target Start/End: Original strand, 38321395 - 38321614
Alignment:
Q  25 ggattaagctttcaacattggctaattgttactcaaaacttgatgcatcaacacgtgaaaggaagttgcaacaagtaaagagcaagttgtacatgctatt 124  Q
    |||| ||| |||| ||||||||| |||||||||||||||||||||  ||  |  ||||||||||||||||| |||||||||| |||||||||||||||||    
T  38321395 ggatgaagttttctacattggctcattgttactcaaaacttgatgtttcggcctgtgaaaggaagttgcaagaagtaaagagtaagttgtacatgctatt 38321494  T
Q  125 tgacaagtattctagcaaaagtactccttcttgcgtgcaaagaattatccaggaccaatcttctagcatgccatttcaagagaagttaaactctttatct 224  Q
    ||||||||||||||||||||||| | ||||| | |||||||||| ||| |||||| ||||||||||||||||||| ||| |||| || || |||| ||||    
T  38321495 tgacaagtattctagcaaaagtatttcttctggggtgcaaagaactattcaggacgaatcttctagcatgccattgcaaaagaaattgaagtcttcatct 38321594  T
Q  225 gacggcctatttgatgtaag 244  Q
     |||||||||||||||||||    
T  38321595 cacggcctatttgatgtaag 38321614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 25 - 244
Target Start/End: Original strand, 38317300 - 38317519
Alignment:
Q  25 ggattaagctttcaacattggctaattgttactcaaaacttgatgcatcaacacgtgaaaggaagttgcaacaagtaaagagcaagttgtacatgctatt 124  Q
    |||| ||| |||| || |||||| |||||||||||||||||||| |||||||  | ||   ||||||||||| ||||||||| |||||||||||||||||    
T  38317300 ggatgaagttttcgacgttggcttattgttactcaaaacttgatccatcaacctgcgagcagaagttgcaactagtaaagagaaagttgtacatgctatt 38317399  T
Q  125 tgacaagtattctagcaaaagtactccttcttgcgtgcaaagaattatccaggaccaatcttctagcatgccatttcaagagaagttaaactctttatct 224  Q
    ||||||||||||||||||||| ||| ||||| || |  |||||| ||  |||||||||||||||| ||||||||| ||| |||| ||||| |||||||||    
T  38317400 tgacaagtattctagcaaaagcacttcttctggcctaaaaagaactactcaggaccaatcttctaccatgccattgcaaaagaaattaaagtctttatct 38317499  T
Q  225 gacggcctatttgatgtaag 244  Q
     ||||||||||  |||||||    
T  38317500 cacggcctattcaatgtaag 38317519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 25 - 229
Target Start/End: Original strand, 38326145 - 38326349
Alignment:
Q  25 ggattaagctttcaacattggctaattgttactcaaaacttgatgcatcaacacgtgaaaggaagttgcaacaagtaaagagcaagttgtacatgctatt 124  Q
    |||||||  |||||||||||||| ||||||||||||||||||||||||||||  |||||||||||||||||||||||| ||  |||||||||||||||||    
T  38326145 ggattaaattttcaacattggcttattgttactcaaaacttgatgcatcaacctgtgaaaggaagttgcaacaagtaaggacgaagttgtacatgctatt 38326244  T
Q  125 tgacaagtattctagcaaaagtactccttcttgcgtgcaaagaattatccaggaccaatcttctagcatgccatttcaagagaagttaaactctttatct 224  Q
    || ||||||||||||| || ||||| ||||| || ||||||||| | | |||| ||||||||| | |||| |||| ||| |||| |  || |||||||||    
T  38326245 tggcaagtattctagccaacgtacttcttctggcatgcaaagaactgttcagggccaatcttcgaccatgtcattgcaaaagaactccaagtctttatct 38326344  T
Q  225 gacgg 229  Q
     ||||    
T  38326345 cacgg 38326349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 42 - 244
Target Start/End: Original strand, 38306564 - 38306766
Alignment:
Q  42 ttggctaattgttactcaaaacttgatgcatcaacacgtgaaaggaagttgcaacaagtaaagagcaagttgtacatgctatttgacaagtattctagca 141  Q
    |||||| |||||||||||||||| ||| |||||||  ||||| ||||||||||| |||||||||  ||||||||||||||||||||||||||||||||||    
T  38306564 ttggctgattgttactcaaaactcgatccatcaacttgtgaacggaagttgcaaaaagtaaagacaaagttgtacatgctatttgacaagtattctagca 38306663  T
Q  142 aaagtactccttcttgcgtgcaaagaattatccaggaccaatcttctagcatgccatttcaagagaagttaaactctttatctgacggcctatttgatgt 241  Q
    |||||||| ||||| |  |||||| || | | |||| ||||||||||| ||||||||| ||| |||| |   | ||||||||| | ||||||||||||||    
T  38306664 aaagtacttcttctggtatgcaaacaactgttcagggccaatcttctaccatgccattgcaaaagaactctgagtctttatctcatggcctatttgatgt 38306763  T
Q  242 aag 244  Q
    |||    
T  38306764 aag 38306766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 34 - 208
Target Start/End: Original strand, 38313898 - 38314072
Alignment:
Q  34 tttcaacattggctaattgttactcaaaacttgatgcatcaacacgtgaaaggaagttgcaacaagtaaagagcaagttgtacatgctatttgacaagta 133  Q
    |||||| |||||||  ||||||||||||||| ||| |||||||  ||||| ||||||||||| |||||||||  ||||||||||||||||||| ||||||    
T  38313898 tttcaagattggctgcttgttactcaaaactagatccatcaacttgtgaacggaagttgcaaaaagtaaagacaaagttgtacatgctatttgccaagta 38313997  T
Q  134 ttctagcaaaagtactccttcttgcgtgcaaagaattatccaggaccaatcttctagcatgccatttcaagagaa 208  Q
     ||||||||||||||| ||||| | ||||||| || |||  ||| ||||||||||| ||||||||| ||| ||||    
T  38313998 ctctagcaaaagtacttcttctagggtgcaaacaactatttagggccaatcttctaccatgccattgcaaaagaa 38314072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 69; Significance: 6e-31; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 37 - 244
Target Start/End: Complemental strand, 38850033 - 38849817
Alignment:
Q  37 caacattggctaattgttactcaaaacttgatgcatcaacacgtgaaaggaagttgcaacaagtaaagagcaagttgtacatgctatttgacaagtattc 136  Q
    |||| |||||| ||||||| |||||||| |||||||||||  ||||||||||| | || ||||||||||| ||||||| |||||||||||| ||| ||||    
T  38850033 caaccttggcttattgttattcaaaactggatgcatcaacctgtgaaaggaagctacagcaagtaaagagaaagttgtgcatgctatttgagaagcattc 38849934  T
Q  137 tagcaaaagtactccttcttgcgtgcaaagaattat---------ccaggaccaatcttctagcatgccatttcaagagaagttaaactctttatctgac 227  Q
    | |||| || ||| || || | || ||||||| |||          |||||||||||||||||||||||||| ||| |||| ||||| ||||||||| |     
T  38849933 tggcaacagcactactgctggggttcaaagaactattaaggagaatcaggaccaatcttctagcatgccattacaaaagaaattaaagtctttatctcat 38849834  T
Q  228 ggcctatttgatgtaag 244  Q
    |||||||||||||||||    
T  38849833 ggcctatttgatgtaag 38849817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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