View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10891_high_3 (Length: 406)
Name: NF10891_high_3
Description: NF10891
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10891_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 377; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 19 - 395
Target Start/End: Complemental strand, 34671460 - 34671084
Alignment:
| Q |
19 |
gtacaatacgataattgatatgtaaaccgacatttttagcttaagtagaaaaatgacaaagtaaaaattgaaatcacttatatgccaccatttacttgtt |
118 |
Q |
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| T |
34671460 |
gtacaatacgataattgatatgtaaaccgacatttttagcttaagtagaaaaatgacaaagtaaaaattgaaatcacttatatgccaccatttacttgtt |
34671361 |
T |
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| Q |
119 |
ttattttaaatatttcaatcaaatattaaatattttacctcaacaataaagtgtgcccatagttttttcttccttgtttccatctttgcttttaagatat |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34671360 |
ttattttaaatatttcaatcaaatattaaatattttacctcaacaataaagtgtgcccatagttttttcttccttgtttccatctttgcttttaagatat |
34671261 |
T |
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| Q |
219 |
tcagcccgaaacctcgaattatgtcgactatctcaaggaagaaaccttgatcttcacaaagaatctgcagcagaacaatgcaaatgagttcacatagcat |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34671260 |
tcagcccgaaacctcgaattatgtcgactatctcaaggaagaaaccttgatcttcacaaagaatctgcagcagaacaatgcaaatgagttcacatagcat |
34671161 |
T |
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| Q |
319 |
agactataaaattttcaaatcatatacattcttattcggtttcttacctctataagcatttggccaggtgatttcat |
395 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34671160 |
agactataaaattttcaaatcatatacattcttattcggtttcttacctctataagcatttggccaggtgatttcat |
34671084 |
T |
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