View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10891_low_10 (Length: 293)

Name: NF10891_low_10
Description: NF10891
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10891_low_10
NF10891_low_10
[»] chr4 (10 HSPs)
chr4 (7-162)||(37179999-37180154)
chr4 (7-162)||(37181583-37181738)
chr4 (7-162)||(37189700-37189855)
chr4 (7-158)||(37187682-37187833)
chr4 (225-279)||(37180220-37180274)
chr4 (225-279)||(37189580-37189634)
chr4 (110-158)||(38704220-38704268)
chr4 (225-280)||(38704293-38704348)
chr4 (225-279)||(37181463-37181517)
chr4 (226-279)||(37187901-37187954)
[»] chr5 (2 HSPs)
chr5 (22-140)||(27096701-27096816)
chr5 (22-140)||(27103004-27103119)


Alignment Details
Target: chr4 (Bit Score: 156; Significance: 6e-83; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 7 - 162
Target Start/End: Original strand, 37179999 - 37180154
Alignment:
Q  7 gaagtgactgctggcaatggtggaatgttgagagatggaattgttggaatatttgtaggaagacttggaagtggtggcatagtgagtttaggcatagaag 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37179999 gaagtgactgctggcaatggtggaatgttgagagatggaattgttggaatatttgtaggaagacttggaagtggtggcatagtgagtttaggcatagaag 37180098  T
Q  107 ggatagtaggcaatggaggaagatttccttgaggcatatttggaattgaaggtaaa 162  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37180099 ggatagtaggcaatggaggaagatttccttgaggcatatttggaattgaaggtaaa 37180154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 7 - 162
Target Start/End: Complemental strand, 37181738 - 37181583
Alignment:
Q  7 gaagtgactgctggcaatggtggaatgttgagagatggaattgttggaatatttgtaggaagacttggaagtggtggcatagtgagtttaggcatagaag 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37181738 gaagtgactgctggcaatggtggaatgttgagagatggaattgttggaatatttgtaggaagacttggaagtggtggcatagtgagtttaggcatagaag 37181639  T
Q  107 ggatagtaggcaatggaggaagatttccttgaggcatatttggaattgaaggtaaa 162  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37181638 ggatagtaggcaatggaggaagatttccttgaggcatatttggaattgaaggtaaa 37181583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 7 - 162
Target Start/End: Complemental strand, 37189855 - 37189700
Alignment:
Q  7 gaagtgactgctggcaatggtggaatgttgagagatggaattgttggaatatttgtaggaagacttggaagtggtggcatagtgagtttaggcatagaag 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37189855 gaagtgactgctggcaatggtggaatgttgagagatggaattgttggaatatttgtaggaagacttggaagtggtggcatagtgagtttaggcatagaag 37189756  T
Q  107 ggatagtaggcaatggaggaagatttccttgaggcatatttggaattgaaggtaaa 162  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37189755 ggatagtaggcaatggaggaagatttccttgaggcatatttggaattgaaggtaaa 37189700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 7 - 158
Target Start/End: Original strand, 37187682 - 37187833
Alignment:
Q  7 gaagtgactgctggcaatggtggaatgttgagagatggaattgttggaatatttgtaggaagacttggaagtggtggcatagtgagtttaggcatagaag 106  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||  || ||||||||||||||||||||||||||||||||||    
T  37187682 gaagtggctgctggcaatggtggaatgttgagagatggaattgttggaaaatttgtaggaaagctaggaagtggtggcatagtgagtttaggcatagaag 37187781  T
Q  107 ggatagtaggcaatggaggaagatttccttgaggcatatttggaattgaagg 158  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  37187782 ggatagtaggcaatggaggaagatttccctgaggcatatttggaattgaagg 37187833  T

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Target: chr4; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 225 - 279
Target Start/End: Original strand, 37180220 - 37180274
Alignment:
Q  225 caaaagatgacgagcttctaggctcatgtttgatattgtcacaactagaagtaaa 279  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  37180220 caaaagatggcgagcttctaggctcatgtttgatattgtcacaactagaagtaaa 37180274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 225 - 279
Target Start/End: Complemental strand, 37189634 - 37189580
Alignment:
Q  225 caaaagatgacgagcttctaggctcatgtttgatattgtcacaactagaagtaaa 279  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  37189634 caaaagatggcgagcttctaggctcatgtttgatattgtcacaactagaagtaaa 37189580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 110 - 158
Target Start/End: Original strand, 38704220 - 38704268
Alignment:
Q  110 tagtaggcaatggaggaagatttccttgaggcatatttggaattgaagg 158  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  38704220 tagtaggcaatggaggaagatttccttgaggcatatttggaattgaagg 38704268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 225 - 280
Target Start/End: Original strand, 38704293 - 38704348
Alignment:
Q  225 caaaagatgacgagcttctaggctcatgtttgatattgtcacaactagaagtaaat 280  Q
    |||||||||||||||||||||| ||||| |||| ||||||||||| ||||||||||    
T  38704293 caaaagatgacgagcttctaggttcatgcttgacattgtcacaacaagaagtaaat 38704348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 225 - 279
Target Start/End: Complemental strand, 37181517 - 37181463
Alignment:
Q  225 caaaagatgacgagcttctaggctcatgtttgatattgtcacaactagaagtaaa 279  Q
    ||||||||| |||||||||||||||||| |||| ||||| ||||| |||||||||    
T  37181517 caaaagatggcgagcttctaggctcatgcttgacattgtgacaacaagaagtaaa 37181463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 226 - 279
Target Start/End: Original strand, 37187901 - 37187954
Alignment:
Q  226 aaaagatgacgagcttctaggctcatgtttgatattgtcacaactagaagtaaa 279  Q
    |||||||| |||||||||||||||||| |||| || |||||||| |||||||||    
T  37187901 aaaagatggcgagcttctaggctcatgcttgacatggtcacaacaagaagtaaa 37187954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 69; Significance: 5e-31; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 22 - 140
Target Start/End: Complemental strand, 27096816 - 27096701
Alignment:
Q  22 aatggtggaatgttgagagatggaattgttggaatatttgtaggaagacttggaagtggtggcatagtgagtttaggcatagaagggatagtaggcaatg 121  Q
    |||||||||| |||||||||||||| |||||||   || |||||||  || |||||||||||||||||||| ||||||||||||||||||||||||||||    
T  27096816 aatggtggaaagttgagagatggaagtgttgga---ttggtaggaatgctaggaagtggtggcatagtgagcttaggcatagaagggatagtaggcaatg 27096720  T
Q  122 gaggaagatttccttgagg 140  Q
    |||||| ||| ||||||||    
T  27096719 gaggaacattaccttgagg 27096701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 22 - 140
Target Start/End: Complemental strand, 27103119 - 27103004
Alignment:
Q  22 aatggtggaatgttgagagatggaattgttggaatatttgtaggaagacttggaagtggtggcatagtgagtttaggcatagaagggatagtaggcaatg 121  Q
    |||||||||| |||||||||||||| |||||||   || || ||||  || |||||||||||||||||||| |||||||  |||||||| ||||||||||    
T  27103119 aatggtggaaagttgagagatggaagtgttgga---ttggttggaatgctaggaagtggtggcatagtgagcttaggcactgaagggatggtaggcaatg 27103023  T
Q  122 gaggaagatttccttgagg 140  Q
    |||||| ||| ||||||||    
T  27103022 gaggaacattaccttgagg 27103004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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