View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10891_low_11 (Length: 288)
Name: NF10891_low_11
Description: NF10891
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10891_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 123; Significance: 3e-63; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 124 - 269
Target Start/End: Original strand, 7488306 - 7488458
Alignment:
| Q |
124 |
aggagtgttaattttgaaaaattatccaagaggcaggaagtgcacttgttctaactattgtgttgctagatgttttggtg-------tagcaatcaatgc |
216 |
Q |
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| T |
7488306 |
aggagtgttaattttgacaaattatccaagaggcaggaagtgcacttgttctaactattgtgttgctagatgttttggtgtagcaactagcaatcaatgc |
7488405 |
T |
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| Q |
217 |
agtgtggtttcgatggtttgtatttcaaatgatgatacaatatgctatcctgc |
269 |
Q |
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| T |
7488406 |
agtgtggtttcgatggtttgtatttcaaatgatgatacaatatgctatcctgc |
7488458 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 45 - 127
Target Start/End: Original strand, 7488059 - 7488141
Alignment:
| Q |
45 |
taaaagagtaatttataaaaacttttttatacatagatataatcaaataacatcaagtgaaaaattgtagatatattttagga |
127 |
Q |
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| T |
7488059 |
taaaagagtaatttataaaaacttttttatacatagatataatcaaataacatcaagtgaaaaattgtagatatattttagga |
7488141 |
T |
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