View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10891_low_16 (Length: 253)

Name: NF10891_low_16
Description: NF10891
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10891_low_16
NF10891_low_16
[»] chr1 (4 HSPs)
chr1 (68-253)||(23770945-23771133)
chr1 (10-45)||(23770892-23770927)
chr1 (10-45)||(37582523-37582558)
chr1 (10-44)||(11839638-11839672)
[»] chr7 (3 HSPs)
chr7 (10-45)||(9350133-9350168)
chr7 (8-44)||(38485984-38486020)
chr7 (8-44)||(48058298-48058334)
[»] chr8 (1 HSPs)
chr8 (10-44)||(35062880-35062914)
[»] chr2 (1 HSPs)
chr2 (10-44)||(31902038-31902072)


Alignment Details
Target: chr1 (Bit Score: 171; Significance: 6e-92; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 68 - 253
Target Start/End: Original strand, 23770945 - 23771133
Alignment:
Q  68 gattaccttttgctagaaatccagttgatccagtaacaaaaaacttcttccctctaagaaatttgacaatgccaattccatcatcaagtccaattaat-- 165  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      
T  23770945 gattaccttttgctagaaatccagttgatccagtaacaaaaaacttcttccctctaagaaatttgacaatgccaattccatcatcaagtccaattaatgt 23771044  T
Q  166 -gtagtagttgttggtccaccataagggacaatatccttaacaacaatatctgtctgatttttaccattttgtgataaaaccaaatttc 253  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  23771045 agtagtagttgttggtccaccataagggacaatatccttaacaacaatatctgtctgatttttaccattttgtgacaaaaccaaatttc 23771133  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 10 - 45
Target Start/End: Original strand, 23770892 - 23770927
Alignment:
Q  10 gcagagacctggtttttaataaaattttgctgattc 45  Q
    ||||||||||||||||||||||||||||||||||||    
T  23770892 gcagagacctggtttttaataaaattttgctgattc 23770927  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 45
Target Start/End: Original strand, 37582523 - 37582558
Alignment:
Q  10 gcagagacctggtttttaataaaattttgctgattc 45  Q
    |||||||| |||||||||||||||||||||||||||    
T  37582523 gcagagacttggtttttaataaaattttgctgattc 37582558  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 44
Target Start/End: Original strand, 11839638 - 11839672
Alignment:
Q  10 gcagagacctggtttttaataaaattttgctgatt 44  Q
    ||||||||||| |||||||||||||||||||||||    
T  11839638 gcagagacctgatttttaataaaattttgctgatt 11839672  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 10 - 45
Target Start/End: Original strand, 9350133 - 9350168
Alignment:
Q  10 gcagagacctggtttttaataaaattttgctgattc 45  Q
    ||||||||||||||||||||||||||||||||||||    
T  9350133 gcagagacctggtttttaataaaattttgctgattc 9350168  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 44
Target Start/End: Original strand, 38485984 - 38486020
Alignment:
Q  8 gagcagagacctggtttttaataaaattttgctgatt 44  Q
    ||||||||||||| |||||||||||||||||||||||    
T  38485984 gagcagagacctgatttttaataaaattttgctgatt 38486020  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 44
Target Start/End: Complemental strand, 48058334 - 48058298
Alignment:
Q  8 gagcagagacctggtttttaataaaattttgctgatt 44  Q
    |||||||||  ||||||||||||||||||||||||||    
T  48058334 gagcagagatatggtttttaataaaattttgctgatt 48058298  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 44
Target Start/End: Original strand, 35062880 - 35062914
Alignment:
Q  10 gcagagacctggtttttaataaaattttgctgatt 44  Q
    ||||||||||| |||||||||||||||||||||||    
T  35062880 gcagagacctgatttttaataaaattttgctgatt 35062914  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 44
Target Start/End: Complemental strand, 31902072 - 31902038
Alignment:
Q  10 gcagagacctggtttttaataaaattttgctgatt 44  Q
    |||||||||| ||||||||||||||||||||||||    
T  31902072 gcagagacctcgtttttaataaaattttgctgatt 31902038  T

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