View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10891_low_17 (Length: 250)
Name: NF10891_low_17
Description: NF10891
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10891_low_17 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 5849350 - 5849591
Alignment:
| Q |
1 |
ccatacttctcatgcaagcccttaaaacattttcgatacacttccagcatgcccatttagctctcctcctagacaaatcttttcttagtgttgtatcttg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
5849350 |
ccatacttctcatgcaagcccttaaaacattttcgatacacttcctgcatgcccatttagctctccttctagacaaatcttttcttagtgttgtatcttg |
5849449 |
T |
|
| Q |
101 |
aagtaagccttttaagttctccttaaactttactttaaagtgttctttgaaccttacataaggtgcgtaagcatgaatagcataaaaggtgtcttgttct |
200 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| |||||||||| ||||||||| |
|
|
| T |
5849450 |
aagtaagtcttttaagttctccttaaactttactttaaagtattcttccaaccttacataaggtgcgtaagcatgaataacataaaaggtatcttgttct |
5849549 |
T |
|
| Q |
201 |
atgacaatttcagggctatgacccaatctcatatcctttgct |
242 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
5849550 |
atgacaatttcagggccatgacccaatctcatatcctttgct |
5849591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University