View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10891_low_18 (Length: 241)
Name: NF10891_low_18
Description: NF10891
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10891_low_18 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 207; Significance: 1e-113; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 19 - 241
Target Start/End: Complemental strand, 28387381 - 28387159
Alignment:
| Q |
19 |
tatacaaagtgccaacaagaagttgaacacaatcaagttttagacgatggtcgttctaaacggatataatcatacataactccttgaaacggactaagag |
118 |
Q |
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| T |
28387381 |
tatacaaagtgccaacaagaagttgaacacaatcaagttttagacgatggtcgttctaaacggatataatcatacataactccttgaaacggactaagag |
28387282 |
T |
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| Q |
119 |
cttttgattgtctcagatagacgatgttctttcctttcacaagaagatcacttggcacatcaatgctgaataaccaatacaatccatgaattccatgtct |
218 |
Q |
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| T |
28387281 |
cttttgattgtctcagatagacgatgttctttcctttcacaagaagatcactaggcacgtcaatgctgaacaaccaatgcaatccatgaattccatgtct |
28387182 |
T |
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| Q |
219 |
tgctatggcattgtctcctccta |
241 |
Q |
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| T |
28387181 |
tgctatggcattgtctcctccta |
28387159 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 35 - 241
Target Start/End: Original strand, 28408444 - 28408647
Alignment:
| Q |
35 |
aagaagttgaacacaatcaagttttagacgatggtcgttctaaacggatataatcatacataactccttgaaacggactaagagcttttgattgtctcag |
134 |
Q |
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| T |
28408444 |
aagaagttgaacacaatcaaatt---gccggtggtcgttctaaacgaatataatcgtacataactccttggaaaggagtatcggctttggactgcctcag |
28408540 |
T |
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| Q |
135 |
atagacgatgttctttcctttcacaagaagatcacttggcacatcaatgctgaataaccaatacaatccatgaattccatgtcttgctatggcattgtct |
234 |
Q |
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| T |
28408541 |
gtagatgatgttctttcctttcacaagaaggttactagacacattaatgctgaacagccgatacaatccatgaattccatgccttgctatggcattatct |
28408640 |
T |
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| Q |
235 |
cctccta |
241 |
Q |
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| T |
28408641 |
cttccta |
28408647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 66 - 238
Target Start/End: Complemental strand, 28396104 - 28395932
Alignment:
| Q |
66 |
tggtcgttctaaacggatataatcatacataactccttgaaacggactaagagcttttgattgtctcagatagacgatgttctttcctttcacaagaaga |
165 |
Q |
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| T |
28396104 |
tggttgttctaaacggatgtaatcatacataactccttggaaaggagtatcggcgttggtctgcgttagatatatgatgttctttcctttcaaaagaaga |
28396005 |
T |
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| Q |
166 |
tcacttggcacatcaatgctgaataaccaatacaatccatgaattccatgtcttgctatggcattgtctcctc |
238 |
Q |
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| T |
28396004 |
ttacttggcacatcaatactgaacaacctatacaatccatgaattccatgtctttgtatgcaattgtctcctc |
28395932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 168 - 233
Target Start/End: Original strand, 28205617 - 28205682
Alignment:
| Q |
168 |
acttggcacatcaatgctgaataaccaatacaatccatgaattccatgtcttgctatggcattgtc |
233 |
Q |
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| T |
28205617 |
acttggcacaccaatgttgaatagccaatagagtccatgaattccatgtctagctattgcattgtc |
28205682 |
T |
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