View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10891_low_23 (Length: 227)
Name: NF10891_low_23
Description: NF10891
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10891_low_23 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 157; Significance: 1e-83; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 28387076 - 28386864
Alignment:
| Q |
1 |
ccttaacacaattttcaatacataatttcgatttttggtaccttaacacgtgcatttccgttaaaatattatgcgaaaattaaaatgatgtacctgtagg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| || ||||||||||||||||| ||||||||||||||| |
|
|
| T |
28387076 |
ccttaacacaattttcaatacataatttcgatttttgataccttagcacgtgcattccc-ttaaaatattatgcgaa--------tgatgtacctgtagg |
28386986 |
T |
|
| Q |
101 |
tcagcatcagcagcactagccaaggccagttgtagtgtgtagtttccgctgattatgtcttgttcatgttcaaatatgatttgccatgttgttggttcat |
200 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
28386985 |
tcagcatcggcagcactagccaaggccagttgcagtgtgtagtttccactgattatgtcttgttcatgttcaaatataatttgccatgttgttggttcat |
28386886 |
T |
|
| Q |
201 |
atgttttattacctttgcttct |
222 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
28386885 |
atgttttattacctttgcttct |
28386864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 83 - 222
Target Start/End: Original strand, 28408789 - 28408928
Alignment:
| Q |
83 |
aaatgatgtacctgtaggtcagcatcagcagcactagccaaggccagttgtagtgtgtagtttccgctgattatgtcttgttcatgttcaaatatgattt |
182 |
Q |
| |
|
|||||| || ||||||||| || ||||||||||||||| ||||||||||| |||||||||||||| ||||||||||| | || |||||||||||| || | |
|
|
| T |
28408789 |
aaatgacgtgcctgtaggttagaatcagcagcactagctaaggccagttgaagtgtgtagtttccactgattatgtcatttttatgttcaaatataatct |
28408888 |
T |
|
| Q |
183 |
gccatgttgttggttcatatgttttattacctttgcttct |
222 |
Q |
| |
|
|||||||||||||||||||||||||||| ||| ||||||| |
|
|
| T |
28408889 |
gccatgttgttggttcatatgttttatttcctgtgcttct |
28408928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 84 - 210
Target Start/End: Complemental strand, 28395329 - 28395203
Alignment:
| Q |
84 |
aatgatgtacctgtaggtcagcatcagcagcactagccaaggccagttgtagtgtgtagtttccgctgattatgtcttgttcatgttcaaatatgatttg |
183 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||| |||||||| |||||||||||||||||||| || ||| ||| |||| |||||||||||| ||||| |
|
|
| T |
28395329 |
aatgatgtacctgtaggtaagcatcagcagcactggccaaggcaagttgtagtgtgtagtttccactctttaagtcatgttgatgttcaaatataatttg |
28395230 |
T |
|
| Q |
184 |
ccatgttgttggttcatatgttttatt |
210 |
Q |
| |
|
||||||||||||||||||||| ||||| |
|
|
| T |
28395229 |
ccatgttgttggttcatatgtattatt |
28395203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 40
Target Start/End: Original strand, 1586998 - 1587031
Alignment:
| Q |
7 |
cacaattttcaatacataatttcgatttttggta |
40 |
Q |
| |
|
||||||||||||||||||||||| |||||||||| |
|
|
| T |
1586998 |
cacaattttcaatacataatttctatttttggta |
1587031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University