View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10891_low_29 (Length: 204)
Name: NF10891_low_29
Description: NF10891
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10891_low_29 |
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Alignment Details
Target: chr2 (Bit Score: 112; Significance: 8e-57; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 112; E-Value: 8e-57
Query Start/End: Original strand, 16 - 131
Target Start/End: Original strand, 14232226 - 14232341
Alignment:
| Q |
16 |
aagggagaagagttacctaatacggtggaatggagtggatcattattgtttcttgtgaagaattgatctctaattccgatatgagtgaatgaagctcaaa |
115 |
Q |
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| T |
14232226 |
aagggagaagagttacctaatacggtggaatggagtggatcattattgtttcttgtgaagaattgatctctaattcctatatgagtgaatgaagctcaaa |
14232325 |
T |
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| Q |
116 |
tttgcaaaacctaatt |
131 |
Q |
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| T |
14232326 |
tttgcaaaacctaatt |
14232341 |
T |
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Target: chr2; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 113 - 177
Target Start/End: Original strand, 14232364 - 14232428
Alignment:
| Q |
113 |
aaatttgcaaaacctaattggaataagaaaattaagaaagttgaataatagatgatttttactaa |
177 |
Q |
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| T |
14232364 |
aaatttgcaaaacctaatttgaataagaaaattaagaaagttgaataatagatgatttttactaa |
14232428 |
T |
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