View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10891_low_4 (Length: 396)
Name: NF10891_low_4
Description: NF10891
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10891_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 357; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 17 - 385
Target Start/End: Complemental strand, 5438430 - 5438062
Alignment:
| Q |
17 |
agcttggtgacttgaaccagagtcttaggaataataattaattaatggtttgacccacacttttaggagaataattaatcagtgatttgagccacgatta |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5438430 |
agcttggtgacttgaaccagagtcttaggaataataattaattaatggtttgacccacacttttaggagaataattaatcagtgatttgagccacgatta |
5438331 |
T |
|
| Q |
117 |
taggagaccaattaattagtggcttaagccacaatttacacattagtttataagggagaataagagagtgtagaaggcattccatacctttctatcaaat |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5438330 |
taggagaccaattaattagtggcttaagccacaatttacacattagtttataagggagaataagagagtgtagaaggcattccatacctttctatcaaat |
5438231 |
T |
|
| Q |
217 |
agttataaggagagtcaactctcttgtaggagctatactgtgcattaggagtctttgactctggtttatctccttcatttttctcttttcaccattgtag |
316 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5438230 |
agttataaggagagtcaactctcgtgtaggagctatactgtgcattaggagtctttgactctggtttatctccttcatttttctcttttcaccattgtag |
5438131 |
T |
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| Q |
317 |
agctcttaaatcatcacttttcattaaatgaaatacaatttcattctcttgaatttgcagttctttcat |
385 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||| |
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| T |
5438130 |
agctcttaaatcatcacttttcattaaatgaaatacaatttcgttctcttgaatttgcggttctttcat |
5438062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 17 - 198
Target Start/End: Complemental strand, 5435903 - 5435715
Alignment:
| Q |
17 |
agcttggtgacttgaaccagagtcttaggaataataattaattaatggtttgacccacacttttaggagaataattaatcagtgatttgagccacgatta |
116 |
Q |
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|||||||| |||||| |||||||||||||||||||||| ||||| ||||||||||||||||||||||| ||| |||||| ||||||||||||||| ||| |
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| T |
5435903 |
agcttggtaacttgagccagagtcttaggaataataataaattagtggtttgacccacacttttaggataattattaattagtgatttgagccacaattt |
5435804 |
T |
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| Q |
117 |
taggagaccaattaattagtggcttaagccacaattta-------cacattagtttataagggagaataagagagtgtagaaggcattc |
198 |
Q |
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|||||| ||||||||||||||||||| |||||||||| ||||||| ||||| ||||||||||||||||||| || ||||||| |
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| T |
5435803 |
caggagatcaattaattagtggcttaaaccacaatttaaggagaccacattaatttatcagggagaataagagagtgtcgacggcattc |
5435715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 260 - 374
Target Start/End: Complemental strand, 5435698 - 5435583
Alignment:
| Q |
260 |
attaggagtctttgactctggtttatctccttcatttttctcttttcaccattgtagagctcttaa-atcatcacttttcattaaatgaaatacaatttc |
358 |
Q |
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||||||||||||||||| ||||||||||| ||||||||||| |||||||||||||| ||||||||| ||||||||||| ||||||| |||||||||||| |
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| T |
5435698 |
attaggagtctttgactgtggtttatctctttcatttttctgttttcaccattgtaaagctcttaagttcatcactttttattaaataaaatacaatttc |
5435599 |
T |
|
| Q |
359 |
attctcttgaatttgc |
374 |
Q |
| |
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|||||||||||||||| |
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|
| T |
5435598 |
attctcttgaatttgc |
5435583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 54 - 95
Target Start/End: Complemental strand, 22280669 - 22280628
Alignment:
| Q |
54 |
ttaattaatggtttgacccacacttttaggagaataattaat |
95 |
Q |
| |
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||||||| |||||||||||||||||||||||||||||||||| |
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| T |
22280669 |
ttaattagtggtttgacccacacttttaggagaataattaat |
22280628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 89; Significance: 9e-43; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 163 - 373
Target Start/End: Original strand, 9067787 - 9068005
Alignment:
| Q |
163 |
tttataagggagaataagagagtgtagaaggcattccatacctttctatcaaatagttataaggagagtcaactctcttgtaggagctatactgtgcatt |
262 |
Q |
| |
|
|||||||| |||||| |||||||||||||||||||| ||||||||| |||||||||| | |||||| |||||||||| ||||||||||| || || ||| |
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| T |
9067787 |
tttataagagagaatgagagagtgtagaaggcattcagtacctttctttcaaatagttgttaggagattcaactctctggtaggagctatgctctggatt |
9067886 |
T |
|
| Q |
263 |
aggagtctttgactctggttta-------tctccttcatttttctcttttcaccattgtagagctcttaa-atcatcacttttcattaaatgaaatacaa |
354 |
Q |
| |
|
|| ||||||||||||||||||| ||||| ||||| |||||||||||||||||||||||| |||||| |||||||||||| |||||||| |
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| T |
9067887 |
agtagtctttgactctggtttagacgtttagtcctttcagtttctgttttcaccattgtagagctcttaagctcatcatttttcattaaataaaatacaa |
9067986 |
T |
|
| Q |
355 |
tttcattctcttgaatttg |
373 |
Q |
| |
|
|||||||||| |||||||| |
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| T |
9067987 |
tttcattctcatgaatttg |
9068005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 17 - 92
Target Start/End: Original strand, 9067661 - 9067736
Alignment:
| Q |
17 |
agcttggtgacttgaaccagagtcttaggaataataattaattaatggtttgacccacacttttaggagaataatt |
92 |
Q |
| |
|
||||||||| ||||| ||| | |||||| | |||| ||||||| ||||||||||||||||||||||||||||||| |
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| T |
9067661 |
agcttggtggcttgatccacaatcttagtagtaatggttaattagtggtttgacccacacttttaggagaataatt |
9067736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 274 - 325
Target Start/End: Complemental strand, 44672778 - 44672728
Alignment:
| Q |
274 |
actctggtttatctccttcatttttctcttttcaccattgtagagctcttaa |
325 |
Q |
| |
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||||||||||||||| ||||||||| | |||||||||||||||||||||||| |
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| T |
44672778 |
actctggtttatctctttcattttt-tgttttcaccattgtagagctcttaa |
44672728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 76; Significance: 5e-35; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 159 - 373
Target Start/End: Complemental strand, 12021720 - 12021518
Alignment:
| Q |
159 |
ttagtttataagggagaataagagagtgtagaaggcattccatacctttctatcaaatagttataaggagagtcaactctcttgtaggagctatactgtg |
258 |
Q |
| |
|
||||||||||| |||| || ||||||||||||||||||| || |||||||||||||||| || ||||||||||||||||| ||||||||||| || || |
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|
| T |
12021720 |
ttagtttataaaggaggat--gagagtgtagaaggcattcagtagctttctatcaaatagtaattaggagagtcaactctctggtaggagctatgctctg |
12021623 |
T |
|
| Q |
259 |
cattaggagtctttgactctggtttatctccttcatttttctcttttcaccattgtagagctcttaa-atcatcacttttcattaaatgaaatacaattt |
357 |
Q |
| |
|
||||||||||||| || || |||| ||||| |||||||||||||||||||||||| ||||||||||||||||||| ||||||||||| |
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| T |
12021622 |
gattaggagtctttaaccct-----------ttca-atttctgttttcaccattgtagagctcttaagctcatcacttttcattaaataaaatacaattt |
12021535 |
T |
|
| Q |
358 |
cattc-tcttgaatttg |
373 |
Q |
| |
|
||||| ||||||||||| |
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|
| T |
12021534 |
cattcatcttgaatttg |
12021518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 17 - 103
Target Start/End: Complemental strand, 12021832 - 12021746
Alignment:
| Q |
17 |
agcttggtgacttgaaccagagtcttaggaataataattaattaatggtttgacccacacttttaggagaataattaatcagtgatt |
103 |
Q |
| |
|
||||||||| ||||| ||| | |||||||| |||| ||||||| |||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
12021832 |
agcttggtggcttgagccacaatcttaggagtaatggttaattagtggtttgacccacacttttaggagaataattaattagtgatt |
12021746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 261 - 295
Target Start/End: Original strand, 3160338 - 3160372
Alignment:
| Q |
261 |
ttaggagtctttgactctggtttatctccttcatt |
295 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||| |
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|
| T |
3160338 |
ttaggagtctttgactctggtttatctctttcatt |
3160372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 262 - 323
Target Start/End: Original strand, 50694616 - 50694676
Alignment:
| Q |
262 |
taggagtctttgactctggtttatctccttcatttttctcttttcaccattgtagagctctt |
323 |
Q |
| |
|
||||||||||||||||||||||||||| |||| |||||| ||||||||||| |||||||||| |
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|
| T |
50694616 |
taggagtctttgactctggtttatctctttca-ttttctgttttcaccattatagagctctt |
50694676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 274 - 323
Target Start/End: Original strand, 21090162 - 21090210
Alignment:
| Q |
274 |
actctggtttatctccttcatttttctcttttcaccattgtagagctctt |
323 |
Q |
| |
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||||||||||||||| |||||||| | |||||||||||||||||||||| |
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|
| T |
21090162 |
actctggtttatctctttcatttta-tgttttcaccattgtagagctctt |
21090210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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