View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10891_low_6 (Length: 363)
Name: NF10891_low_6
Description: NF10891
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10891_low_6 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 285; Significance: 1e-160; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 3 - 348
Target Start/End: Complemental strand, 45178564 - 45178214
Alignment:
| Q |
3 |
attcacaatggcggaatcctacaaattagcactttatatcttatcctannnnnnngaattgatttaaaataggaaagatgaattttacaattgttttgat |
102 |
Q |
| |
|
|||| ||||||||||| ||||||||||||||||||||||||| || || ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45178564 |
attcgcaatggcggaaccctacaaattagcactttatatcttgtcttatttttttgaattgatttaaaataggaaagatgaattttacaattgttttgat |
45178465 |
T |
|
| Q |
103 |
atgtctgtttttatttattt----gtgtaacacaatatacatttttcttaaaatcatctttcctatgtacattcaaattcctactcaattaaatacattt |
198 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45178464 |
atgtctgtttttatttatttatttgtgtaacacaatatacatttttcttaaaatcatctttcctatgtacattcaaattcctactcaattaaatacattt |
45178365 |
T |
|
| Q |
199 |
ctatctagtttgtgttgactgtattcttcttgtaatagcaggaggcaattatagaggccactgacgacacaacaaatagattgacagataaatttttcca |
298 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45178364 |
ctatctagtttgtgttgactgtattcttcttgtaatagcaggaggcaattatagaggccaatgacgacacaacaaatagattgacagataaatttttcca |
45178265 |
T |
|
| Q |
299 |
gttgttttgtttgtggtag-aagctaacttataattccttgtcacaaactg |
348 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
45178264 |
gttgttttgtttgtggtagaaagctaacttataattccttgtcacaaactg |
45178214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 189 - 289
Target Start/End: Complemental strand, 45171487 - 45171387
Alignment:
| Q |
189 |
aaatacatttctatctagtttgtgttgactgtattcttcttgtaatagcaggaggcaattatagaggccactgacgacacaacaaatagattgacagata |
288 |
Q |
| |
|
|||| ||||||| || ||||||| ||||| |||||||| ||||| ||||||||| | ||||||||| || ||||||| || || || ||||||||||| |
|
|
| T |
45171487 |
aaatgcatttctgtccagtttgttttgacggtattctttttgtattagcaggagcctgttatagaggtcaatgacgacgcagcagatgaattgacagata |
45171388 |
T |
|
| Q |
289 |
a |
289 |
Q |
| |
|
| |
|
|
| T |
45171387 |
a |
45171387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University