View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10891_low_8 (Length: 308)
Name: NF10891_low_8
Description: NF10891
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10891_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 228; Significance: 1e-126; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 19 - 288
Target Start/End: Complemental strand, 38942398 - 38942129
Alignment:
| Q |
19 |
cttgagctgtctgccctttctatctttgaccagtccatcacnnnnnnnctcagccatggcttgtgcatctttcatcggtttctttttcagctccatctgc |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38942398 |
cttgagctgtctgccctttctatctttgaccagtccatcactttttttctcagccatggcttgtgcatctttcatcggtttctttttcagctccatctgc |
38942299 |
T |
|
| Q |
119 |
atagtgatatagatatagatagataagnnnnnnntaaagcatgtaattacagtttcaggtgaagcaaagaaaacaaattaatatcaaaaaaccaaatgca |
218 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38942298 |
atagtgatatagatatagatagataagaaaaaaataaagcatgtaattacagtttcaggtgaagcaaagaaaacaaattaatatcaaaaaaccaaatgca |
38942199 |
T |
|
| Q |
219 |
atagaagctaaactactactagtgagtcatacccctacttgtgaatctgattcttcaggtccctctttct |
288 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38942198 |
atagaagctaaactactactagtgagtcatacccctacttgtgaatctgattcttcaggtccctctttct |
38942129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 19 - 288
Target Start/End: Complemental strand, 38942118 - 38941849
Alignment:
| Q |
19 |
cttgagctgtctgccctttctatctttgaccagtccatcacnnnnnnnctcagccatggcttgtgcatctttcatcggtttctttttcagctccatctgc |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38942118 |
cttgagctgtctgccctttctatctttgaccagtccatcactttttttctcagccatggcttgtgcatctttcatcggtttctttttcagctccatctgc |
38942019 |
T |
|
| Q |
119 |
atagtgatatagatatagatagataagnnnnnnntaaagcatgtaattacagtttcaggtgaagcaaagaaaacaaattaatatcaaaaaaccaaatgca |
218 |
Q |
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|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38942018 |
atagtgatatagatatagatagataagaaaaaaataaagcatgtaattacagtttcaggtgaagcaaagaaaacaaattaatatcaaaaaaccaaatgca |
38941919 |
T |
|
| Q |
219 |
atagaagctaaactactactagtgagtcatacccctacttgtgaatctgattcttcaggtccctctttct |
288 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38941918 |
atagaagctaaactactactggtgagtcatacccctacttgtgaatctgattcttcaggtccctctttct |
38941849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 19 - 288
Target Start/End: Complemental strand, 38942680 - 38942409
Alignment:
| Q |
19 |
cttgagctgtctgccctttctatctttgaccagtccatcacnnnnnnnctcagccatggcttgtgcatctttcatcggtttctttttcagctccatctgc |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38942680 |
cttgagctgtctgccctttctatctttgaccagtccatcacttttttcctcagccttggcttgtgcatctttcatcggtttctttttcagctccatctgc |
38942581 |
T |
|
| Q |
119 |
atagtgatatagatata--gatagataagnnnnnnntaaagcatgtaattacagtttcaggtgaagcaaagaaaacaaattaatatcaaaaaaccaaatg |
216 |
Q |
| |
|
||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38942580 |
atagtgatatagatatatagatagataagaaaaaaataaagcatgtaattacagtttcaggtgaagcaaagaaaacaaattaatatcaaaaaaccaaatg |
38942481 |
T |
|
| Q |
217 |
caatagaagctaaactactactagtgagtcatacccctacttgtgaatctgattcttcaggtccctctttct |
288 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38942480 |
caatagaagctaaactcctactagtgagtcatacccctacttgtgaatctgattcttcaggtccctctttct |
38942409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 19 - 242
Target Start/End: Complemental strand, 38941838 - 38941613
Alignment:
| Q |
19 |
cttgagctgtctgccctttctatctttgaccagtccatcacnnnnnnnctcagccatggcttgtgcatctttcatcggtttctttttcagctccatctgc |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38941838 |
cttgagctgtctgccctttctatctttgaccagtccatcactttttttctcagccatggcttgtgcatctttcatcggtttctttttcagctccatctgc |
38941739 |
T |
|
| Q |
119 |
atagtgatatagatata--gatagataagnnnnnnntaaagcatgtaattacagtttcaggtgaagcaaagaaaacaaattaatatcaaaaaaccaaatg |
216 |
Q |
| |
|
||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
38941738 |
atagtgatatagatatatagatagataagaaaaaaataaagcatgtaattacagtttcaggtgaagcaaagaaaacaaattaatattaaaaaaccaaatg |
38941639 |
T |
|
| Q |
217 |
caatagaagctaaactactactagtg |
242 |
Q |
| |
|
|||||| || |||||||||||||||| |
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|
| T |
38941638 |
caataggagttaaactactactagtg |
38941613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 153 - 288
Target Start/End: Complemental strand, 38942826 - 38942691
Alignment:
| Q |
153 |
taaagcatgtaattacagtttcaggtgaagcaaagaaaacaaattaatatcaaaaaaccaaatgcaatagaagctaaactactactagtgagtcataccc |
252 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| ||||||| |||||||||||| |
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|
| T |
38942826 |
taaagcatgtaattacagtttcaggtgaagcaaagaaaacaaattaatattcaaaaaccaaatgcaatagaagttaaaccactactattgagtcataccc |
38942727 |
T |
|
| Q |
253 |
ctacttgtgaatctgattcttcaggtccctctttct |
288 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||| |
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| T |
38942726 |
ctacttgtgaaactgattcttcaggtccctctttct |
38942691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 235 - 288
Target Start/End: Complemental strand, 38941602 - 38941549
Alignment:
| Q |
235 |
tactagtgagtcatacccctacttgtgaatctgattcttcaggtccctctttct |
288 |
Q |
| |
|
|||||||||||| |||||||| || ||||||||||||||||||||||||||||| |
|
|
| T |
38941602 |
tactagtgagtcgtacccctaattctgaatctgattcttcaggtccctctttct |
38941549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 106
Target Start/End: Complemental strand, 38941538 - 38941448
Alignment:
| Q |
19 |
cttgagctgtctgccctttctatctttgaccagtccatcacnnnnnnnctca---gccatggcttgtgcatctttcatcggtttctttttc |
106 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||| |||||| |||| ||| |||||||||||||||||||| |||||| |||| |
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|
| T |
38941538 |
cttgagctgtcttccctttctatctttgaccagttcatcactttttttctcagccgccttggcttgtgcatctttcatcagtttctctttc |
38941448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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