View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10892_1 (Length: 545)
Name: NF10892_1
Description: NF10892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10892_1 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 521; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 521; E-Value: 0
Query Start/End: Original strand, 1 - 545
Target Start/End: Complemental strand, 30878018 - 30877474
Alignment:
| Q |
1 |
tcatctactgtcacttgttcactgacactgtcattttcatcactatcacactccaaaacaactctgacacagaacaaacacctctccttattccattgtt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30878018 |
tcatctactgtcacttgttcactgacactgtcattttcatcactatcacactccaaaacaactctgacacagaacaaacacctctccttattccattgtt |
30877919 |
T |
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| Q |
101 |
tccaaggttgtctcctgtgtttggtccccacaaacaactctcctttttcatttctcttttcactttgctatggaaatggaaggttatgatatatttggag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30877918 |
tccaaggttgtctcctgtgtttggtccccacaaacaactctcctttttcatttctcttttcactttgctatggaaatggaaggttatgatatatttggag |
30877819 |
T |
|
| Q |
201 |
atgcgactgagagaattagtaaaaatggttttgaagtaaacaatgaggtaattggaagtgggtatggttcaagtttctctctggttttggatagggagag |
300 |
Q |
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| T |
30877818 |
atgctactgagagaattggtaaaaatggttttgaagtaaacaatgaggtaattggaagtgggtatggttcaagtttctctctggttttggatagggagag |
30877719 |
T |
|
| Q |
301 |
aggggagcttgtagaggcacctgttaaaatggaaggaaagggtgtgtccactacagagagaagtgttgaagctttgaagaatcatagtgaggccgaaagg |
400 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
30877718 |
aggggagcttgtagaggaacctgttaaaatggaaggaaagggtgtgtccactacagagagaagtgttgaagctttgaagaatcatagtgaggcagaaagg |
30877619 |
T |
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| Q |
401 |
aggagaagagctaggattaatgcacatcttgatactcttcgttgtgtcattccaggtgctttgaaggttagttcaacataatgcttttacatcttccttt |
500 |
Q |
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| T |
30877618 |
aggagaagagctaggattaatgcacatcttgatactcttcgttgtgtcattccaggtgctttgaaggttagttcaacataatgcttttacatcatccttt |
30877519 |
T |
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| Q |
501 |
ctttaatcattgagaaaagtaatttaactccatgtttggataaaa |
545 |
Q |
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| T |
30877518 |
ctttaatcattcagaaaagtaatttaactccatgtttggataaaa |
30877474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 75; Significance: 3e-34; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 248 - 476
Target Start/End: Complemental strand, 39332933 - 39332708
Alignment:
| Q |
248 |
gtaattggaagtgggtatggttcaagtttctctctggttttggatagggagagaggggagcttgtagaggcacctgttaaaatggaaggaaagggtgtgt |
347 |
Q |
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|||| ||||| ||| ||||||||| || || |||||||| ||||| || | ||| |||||||| |||||| |||| ||| ||||| |||||||||| | |
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| T |
39332933 |
gtaaatggaaatggatatggttcatcttcttcactggttttagatagagaaaaaggagagcttgtggaggcagctgtgaaattggaaagaaagggtgtat |
39332834 |
T |
|
| Q |
348 |
ccactacagagagaagtgttgaagctttgaagaatcatagtgaggccgaaaggaggagaagagctaggattaatgcacatcttgatactcttcgttgtgt |
447 |
Q |
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| T |
39332833 |
cacct---gagagaagtattgaagctttgaagaatcatagtgaagcagaaagaaggagaagagcaagaattaattcacatcttgatacacttcgtagtgt |
39332737 |
T |
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| Q |
448 |
cattccaggtgctttgaaggttagttcaa |
476 |
Q |
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|||||||| ||| ||||||||||||| |
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| T |
39332736 |
tattccaggggctaataaggttagttcaa |
39332708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 248 - 385
Target Start/End: Complemental strand, 30203705 - 30203571
Alignment:
| Q |
248 |
gtaattggaagtgggtatggttcaagtttctctctggttttggatagggagagaggggagcttgtagaggcacctgttaaaatggaaggaaagggtgtgt |
347 |
Q |
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|||| ||||| ||| ||||||||| || || |||||||||||||| || | ||| ||| |||| |||||| |||| ||| | ||| |||||||||||| |
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| T |
30203705 |
gtaaatggaaatggatatggttcatcttcttcgctggttttggatagagaaaaaggagagtttgtggaggcaactgtgaaattagaaagaaagggtgtgt |
30203606 |
T |
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| Q |
348 |
ccactacagagagaagtgttgaagctttgaagaatcat |
385 |
Q |
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| T |
30203605 |
cacct---gagagaagtattgaagctttgaagaatcat |
30203571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 53; Significance: 4e-21; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 248 - 448
Target Start/End: Complemental strand, 12102677 - 12102483
Alignment:
| Q |
248 |
gtaattggaagtgggtatggttcaagtttctctctggttttggatagggagagaggggagcttgtagaggcacctgttaaaatggaaggaaagggtgtgt |
347 |
Q |
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|||| ||||||||| ||||||||| || || |||||||||||||| || | ||| |||||||| |||||| |||| ||| | ||| |||||||||||| |
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| T |
12102677 |
gtaaatggaagtggatatggttcatcttcttcactggttttggatagagaaaaaggagagcttgtggaggcagctgtgaaattagaaagaaagggtgtgt |
12102578 |
T |
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| Q |
348 |
ccactacagagagaagtgttgaagctttgaagaatcatagtgaggccgaaaggaggagaagagctaggattaatgcacatcttgatactcttcgttgtgt |
447 |
Q |
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| || | ||||||| | ||||||||||||||||||||||| || || |||||||||||| || |||||| |||||||||||| |||||| |||| |
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| T |
12102577 |
cacct---gggagaagtatcgaagctttgaagaatcatagtgaagcaga---gaggagaagagcaagaattaatttacatcttgatacacttcgtagtgt |
12102484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 256 - 390
Target Start/End: Complemental strand, 17146603 - 17146474
Alignment:
| Q |
256 |
aagtgggtatggttcaagtttctctctggttttggatagggagagaggggagcttgtagaggcacctgttaaaatggaaggaaagggtgtgtccactaca |
355 |
Q |
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|||||| ||||||||| || || |||||||||||||| || | ||| ||||||| |||||| |||| ||| | ||| |||||||||| ||| | |
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| T |
17146603 |
aagtggatatggttcatcttcttcactggttttggatagagaaaaaggagagcttgcggaggcagctgtgaaattagaaagaaagggtgt---cac--ct |
17146509 |
T |
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| Q |
356 |
gagagaagtgttgaagctttgaagaatcatagtga |
390 |
Q |
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||||||||| ||||||||||||||||||||||||| |
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| T |
17146508 |
gagagaagtattgaagctttgaagaatcatagtga |
17146474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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