View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10892_11 (Length: 311)

Name: NF10892_11
Description: NF10892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10892_11
NF10892_11
[»] chr7 (5 HSPs)
chr7 (1-223)||(21670879-21671087)
chr7 (249-296)||(21669160-21669207)
chr7 (1-134)||(19640028-19640162)
chr7 (1-132)||(8268063-8268196)
chr7 (1-58)||(30256701-30256758)
[»] chr3 (5 HSPs)
chr3 (1-228)||(7571410-7571635)
chr3 (1-51)||(6606849-6606899)
chr3 (1-46)||(12966064-12966109)
chr3 (1-117)||(23661643-23661761)
chr3 (85-126)||(6606934-6606975)
[»] chr1 (2 HSPs)
chr1 (1-132)||(10139859-10139992)
chr1 (66-135)||(51041713-51041782)
[»] chr5 (4 HSPs)
chr5 (1-126)||(23977515-23977642)
chr5 (1-32)||(42001306-42001337)
chr5 (68-114)||(11981543-11981589)
chr5 (1-109)||(39522841-39522951)
[»] chr8 (5 HSPs)
chr8 (1-228)||(34118150-34118369)
chr8 (66-132)||(17025706-17025772)
chr8 (66-132)||(17556198-17556264)
chr8 (1-132)||(38182427-38182563)
chr8 (89-134)||(2965391-2965436)
[»] chr6 (2 HSPs)
chr6 (2-102)||(15991934-15992036)
chr6 (2-102)||(15999596-15999698)
[»] scaffold0060 (1 HSPs)
scaffold0060 (1-58)||(48081-48138)
[»] chr4 (2 HSPs)
chr4 (1-58)||(39319484-39319541)
chr4 (1-41)||(32221289-32221329)
[»] scaffold0045 (1 HSPs)
scaffold0045 (66-134)||(82833-82901)
[»] scaffold0330 (1 HSPs)
scaffold0330 (1-58)||(19806-19863)
[»] scaffold0240 (1 HSPs)
scaffold0240 (1-58)||(3824-3881)
[»] chr2 (4 HSPs)
chr2 (66-110)||(30628609-30628653)
chr2 (74-134)||(25478562-25478622)
chr2 (74-110)||(30618599-30618635)
chr2 (74-134)||(30655391-30655450)


Alignment Details
Target: chr7 (Bit Score: 148; Significance: 4e-78; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 21671087 - 21670879
Alignment:
Q  1 tatgtctaccgaagaaattacttattgaggttttgttgtccttaaatacaagaaggattttatagtatagaattacatctctcgactcaaacaatgaagt 100  Q
    ||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||| |||              ||||||||||||||||||||||    
T  21671087 tatgtctaccgaagaaattacttattgagattctgttgtccttaaatacaagaaggatttcata--------------ctctcgactcaaacaatgaagt 21671002  T
Q  101 gcttgttgttataacaagaacactaaaaaattcatacacacaactctagatctgttttaaatttattgtgaataaaaactccaattgtacctgattatca 200  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  21671001 gcttgttgttataacaacaacactaaaaaattcatacacacaactctagatctgttttaaatttattgtgaataaaaactccaattatacctgattatca 21670902  T
Q  201 ttgttaatgataaattgacaagt 223  Q
    ||| || ||||||||||||||||    
T  21670901 ttgatattgataaattgacaagt 21670879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 249 - 296
Target Start/End: Complemental strand, 21669207 - 21669160
Alignment:
Q  249 cttggatcggaaaagaaataatgtgatgttgttatttgatgaactaat 296  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  21669207 cttggatcggaaaagaaataatgtgatgttgttatttgatgaactaat 21669160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 1 - 134
Target Start/End: Complemental strand, 19640162 - 19640028
Alignment:
Q  1 tatgtctaccgaagaaattacttattgaggttttgttgtccttaaatacaagaaggattttatagtatagaattacatctctcgactcaa-acaatgaag 99  Q
    |||||||||||||||||||||||||||| |||| ||||||| ||||||||| ||||||   |   ||||||| ||||| |||  ||| || | |||||||    
T  19640162 tatgtctaccgaagaaattacttattgaagtttcgttgtccctaaatacaaaaaggataaaaagctatagaaatacatatctatactgaacataatgaag 19640063  T
Q  100 tgcttgttgttataacaagaacactaaaaaattca 134  Q
    || |||||||||| |||| |||||||| |||||||    
T  19640062 tgattgttgttatgacaacaacactaagaaattca 19640028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 8268196 - 8268063
Alignment:
Q  1 tatgtctaccgaagaaattacttattgaggttttgttgtccttaaatacaagaaggatt--ttatagtatagaattacatctctcgactcaaacaatgaa 98  Q
    |||||||||||||||||||||| |||| |||| ||||||||  ||||| || || |||   | |   ||||||| ||| ||| |||||| |||| |||||    
T  8268196 tatgtctaccgaagaaattactaattgtggttatgttgtcccgaaataaaacaatgataaatcaagctatagaaatacgtctttcgactaaaacgatgaa 8268097  T
Q  99 gtgcttgttgttataacaagaacactaaaaaatt 132  Q
    ||||||||||||  ||||| |||||||| |||||    
T  8268096 gtgcttgttgtttcaacaacaacactaagaaatt 8268063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 30256758 - 30256701
Alignment:
Q  1 tatgtctaccgaagaaattacttattgaggttttgttgtccttaaatacaagaaggat 58  Q
    |||||||| ||||||||||||||||||||| || ||||||| |||||| || ||||||    
T  30256758 tatgtctatcgaagaaattacttattgaggcttcgttgtccctaaataaaacaaggat 30256701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 67; Significance: 9e-30; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 7571410 - 7571635
Alignment:
Q  1 tatgtctaccgaagaaattacttattgaggttttgttgtccttaaatacaagaaggatt--ttatagtatagaattacatctctcgactcaaacaatgaa 98  Q
    |||||||||||||||| ||||||||| |||||  ||||| | ||||||||  ||||||   | |   ||||||| ||||| | | |||| ||||||||||    
T  7571410 tatgtctaccgaagaagttacttattaaggttcagttgttcctaaatacattaaggataaatcaagctatagaaatacatatttagactgaaacaatgaa 7571509  T
Q  99 gtgcttgttgttataacaagaacactaaaaaattcatacacacaactctagatctgttttaaatttattgtgaataaaaactccaattgtacctgattat 198  Q
    | | ||||||||||||||| |||| ||| ||||||| | ||| ||      |||||||||||| | |||||||||||||||||||||||||| |||||||    
T  7571510 gagtttgttgttataacaacaacattaagaaattcacatacataa------atctgttttaaagtcattgtgaataaaaactccaattgtacgtgattat 7571603  T
Q  199 cattgttaatgat--aaattgacaagtttgtt 228  Q
    ||||| |||||||  |||||||||||||||||    
T  7571604 cattgataatgataaaaattgacaagtttgtt 7571635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 6606849 - 6606899
Alignment:
Q  1 tatgtctaccgaagaaattacttattgaggttttgttgtccttaaatacaa 51  Q
    ||||||||||||||||||||||||||||||||| ||||||| |||||||||    
T  6606849 tatgtctaccgaagaaattacttattgaggtttcgttgtccctaaatacaa 6606899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 12966064 - 12966109
Alignment:
Q  1 tatgtctaccgaagaaattacttattgaggttttgttgtccttaaa 46  Q
    ||||||||||||||||||||||||||||||||| ||||||| ||||    
T  12966064 tatgtctaccgaagaaattacttattgaggtttcgttgtccctaaa 12966109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 23661643 - 23661761
Alignment:
Q  1 tatgtctaccgaagaaattacttattgaggttttgttgtccttaaatacaagaaggattt-tatagt-atagaattacatctctcgactcaaacaatgaa 98  Q
    |||||||||||||||| |||||| ||||| ||   |||||| | ||||||||||||||   |  ||| |||||||||||||  | |||| |||||| |||    
T  23661643 tatgtctaccgaagaagttacttgttgagcttcaattgtccctgaatacaagaaggataaatcaagtcatagaattacatcctttgactgaaacaacgaa 23661742  T
Q  99 gtgcttgttgttataacaa 117  Q
    |||||||||||||||||||    
T  23661743 gtgcttgttgttataacaa 23661761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 85 - 126
Target Start/End: Original strand, 6606934 - 6606975
Alignment:
Q  85 actcaaacaatgaagtgcttgttgttataacaagaacactaa 126  Q
    ||| ||||||||||||| ||||||||||||||| ||||||||    
T  6606934 actgaaacaatgaagtgtttgttgttataacaacaacactaa 6606975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 8e-18; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 10139992 - 10139859
Alignment:
Q  1 tatgtctaccgaagaaattacttattgaggttttgttgtccttaaatacaagaaggatt--ttatagtatagaattacatctctcgactcaaacaatgaa 98  Q
    |||||||||||||||| || ||||||||||||  ||||||| ||||||||  ||||||   | | | ||||||||||||||| |||||| |||| | |||    
T  10139992 tatgtctaccgaagaagttgcttattgaggttaagttgtccctaaatacattaaggataaatcaaactatagaattacatctttcgactgaaacgacgaa 10139893  T
Q  99 gtgcttgttgttataacaagaacactaaaaaatt 132  Q
    ||||||||||||  ||||| |||||||| |||||    
T  10139892 gtgcttgttgtttcaacaacaacactaagaaatt 10139859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 66 - 135
Target Start/End: Original strand, 51041713 - 51041782
Alignment:
Q  66 tatagaattacatctctcgactcaaacaatgaagtgcttgttgttataacaagaacactaaaaaattcat 135  Q
    ||||||| ||||||| |||||| ||||||||||||| ||||||||||||||  |||||||  ||||||||    
T  51041713 tatagaaatacatctatcgactgaaacaatgaagtgtttgttgttataacagcaacactatgaaattcat 51041782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 126
Target Start/End: Original strand, 23977515 - 23977642
Alignment:
Q  1 tatgtctaccgaagaaattacttattgaggttttgttgtccttaaatacaagaaggatt--ttatagtatagaattacatctct-cgactcaaacaatga 97  Q
    |||||||||||||||||||| |||||||||||| ||| ||| |||||| || ||||||   | |   ||||||| ||||||| | ||||| |||||||||    
T  23977515 tatgtctaccgaagaaattatttattgaggtttcgttatccctaaataaaa-aaggataaatcaagctatagaaatacatcttttcgactgaaacaatga 23977613  T
Q  98 agtgcttgttgttataacaagaacactaa 126  Q
    |||| ||||||||||||||| ||||||||    
T  23977614 agtgtttgttgttataacaacaacactaa 23977642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 42001337 - 42001306
Alignment:
Q  1 tatgtctaccgaagaaattacttattgaggtt 32  Q
    ||||||||||||||||||||||||||||||||    
T  42001337 tatgtctaccgaagaaattacttattgaggtt 42001306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 68 - 114
Target Start/End: Original strand, 11981543 - 11981589
Alignment:
Q  68 tagaattacatctctcgactcaaacaatgaagtgcttgttgttataa 114  Q
    ||||| ||||||| |||||| ||||||||||||| ||||||||||||    
T  11981543 tagaaatacatctttcgactgaaacaatgaagtgattgttgttataa 11981589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 109
Target Start/End: Complemental strand, 39522951 - 39522841
Alignment:
Q  1 tatgtctaccgaagaaattacttattgaggttttgttgtccttaaatacaagaaggat-tttatagt-atagaattacatctctcgactcaaacaatgaa 98  Q
    |||||||||||||||| |||||| ||||| ||   |||||| ||||||||||||||||   |  ||| |||||||||||||  |||||| ||||||  ||    
T  39522951 tatgtctaccgaagaagttacttgttgagcttcaattgtccctaaatacaagaaggataaatcaagtcatagaattacatccttcgactgaaacaacaaa 39522852  T
Q  99 gtgcttgttgt 109  Q
    |||||||||||    
T  39522851 gtgcttgttgt 39522841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 34118369 - 34118150
Alignment:
Q  1 tatgtctaccgaagaaattacttattgaggttttgttgtccttaaatacaagaaggat--tttatagtatagaattacatctctcgactcaaacaatgaa 98  Q
    |||||||||||||||| ||| |||||||||||  ||||||| ||||||||||||||||   | |   ||||||| ||||||| || ||| |||| |||||    
T  34118369 tatgtctaccgaagaagttatttattgaggttcagttgtccctaaatacaagaaggataaatcaagctatagaaatacatctttcaactgaaacgatgaa 34118270  T
Q  99 gtgcttgttgttataacaagaacactaaaaaattcatacacacaactctagatctgttttaaatttattgtgaataaaaactccaattgtacctgattat 198  Q
    ||| ||  |||||||||||  | ||||| |||| || | |||||  |||            || |||||||||||||||||||||| ||||| |||||||    
T  34118269 gtgtttactgttataacaacgaaactaagaaatccacatacacagttct------------aacttattgtgaataaaaactccaactgtacgtgattat 34118182  T
Q  199 cattgttaatg--ataaattgacaagtttgtt 228  Q
    ||||| |||||  | |||||||||||||||||    
T  34118181 cattgataatggtaaaaattgacaagtttgtt 34118150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 66 - 132
Target Start/End: Complemental strand, 17025772 - 17025706
Alignment:
Q  66 tatagaattacatctctcgactcaaacaatgaagtgcttgttgttataacaagaacactaaaaaatt 132  Q
    ||||||||||||||| |||||| |||| | |||||||||||||||  ||||| |||||||| |||||    
T  17025772 tatagaattacatctttcgactgaaaccacgaagtgcttgttgtttcaacaacaacactaagaaatt 17025706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 66 - 132
Target Start/End: Complemental strand, 17556264 - 17556198
Alignment:
Q  66 tatagaattacatctctcgactcaaacaatgaagtgcttgttgttataacaagaacactaaaaaatt 132  Q
    ||||||||||||||| |||||| |||| | |||||||||||||||  ||||| |||||||| |||||    
T  17556264 tatagaattacatctttcgactgaaaccacgaagtgcttgttgtttcaacaacaacactaagaaatt 17556198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 38182427 - 38182563
Alignment:
Q  1 tatgtctaccgaagaaatta---cttattgaggttttgttgtccttaaatacaagaaggattttatag-tatagaattacatctctcgactcaaacaatg 96  Q
    ||||||||||||||||||||   ||||||||| ||| ||||||| || |||||||||||||   |  | ||||||| ||||||| |||||| |||| |||    
T  38182427 tatgtctaccgaagaaattattacttattgagatttcgttgtccctatatacaagaaggataaaaaggctatagaaatacatctttcgactgaaacgatg 38182526  T
Q  97 aagtgcttgttg-ttataacaagaacactaaaaaatt 132  Q
    ||||| |||||| ||  ||||| |||||||| |||||    
T  38182527 aagtgattgttgcttcaaacaacaacactaagaaatt 38182563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 134
Target Start/End: Complemental strand, 2965436 - 2965391
Alignment:
Q  89 aaacaatgaagtgcttgttgttataacaagaacactaaaaaattca 134  Q
    |||| |||||||| ||||||| ||||||| ||||||||||||||||    
T  2965436 aaacgatgaagtgtttgttgtcataacaacaacactaaaaaattca 2965391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 2 - 102
Target Start/End: Original strand, 15991934 - 15992036
Alignment:
Q  2 atgtctaccgaagaaattacttattgaggttttgttgtccttaaatacaagaaggat--tttatagtatagaattacatctctcgactcaaacaatgaag 99  Q
    |||||||||||||||| |||| |||||||||||||||||| |||| || | | ||||   | ||| ||||||| ||||||| |||||| |||||||||||    
T  15991934 atgtctaccgaagaaactactcattgaggttttgttgtccctaaagacgacagggataaatcatattatagaaatacatctttcgactgaaacaatgaag 15992033  T
Q  100 tgc 102  Q
    |||    
T  15992034 tgc 15992036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 2 - 102
Target Start/End: Original strand, 15999596 - 15999698
Alignment:
Q  2 atgtctaccgaagaaattacttattgaggttttgttgtccttaaatacaagaaggat--tttatagtatagaattacatctctcgactcaaacaatgaag 99  Q
    |||||||||||||||| |||| |||||||||||||||||| |||| || | | ||||   | ||| ||||||| ||||||| |||||| |||||||||||    
T  15999596 atgtctaccgaagaaactactcattgaggttttgttgtccctaaagacgacagggataaatcatattatagaaatacatctttcgactgaaacaatgaag 15999695  T
Q  100 tgc 102  Q
    |||    
T  15999696 tgc 15999698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 48081 - 48138
Alignment:
Q  1 tatgtctaccgaagaaattacttattgaggttttgttgtccttaaatacaagaaggat 58  Q
    ||||| ||||||||||||||||||||||| ||| ||||||| |||||||| |||||||    
T  48081 tatgtttaccgaagaaattacttattgagatttcgttgtccctaaatacacgaaggat 48138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 39319541 - 39319484
Alignment:
Q  1 tatgtctaccgaagaaattacttattgaggttttgttgtccttaaatacaagaaggat 58  Q
    ||||||||||||| |||||||||||||||||||  |||| | ||||||||||||||||    
T  39319541 tatgtctaccgaaaaaattacttattgaggtttcattgttcctaaatacaagaaggat 39319484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 32221289 - 32221329
Alignment:
Q  1 tatgtctaccgaagaaattacttattgaggttttgttgtcc 41  Q
    |||||||||||||||||||||||||||||||| ||||||||    
T  32221289 tatgtctaccgaagaaattacttattgaggttatgttgtcc 32221329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 66 - 134
Target Start/End: Complemental strand, 82901 - 82833
Alignment:
Q  66 tatagaattacatctctcgactcaaacaatgaagtgcttgttgttataacaagaacactaaaaaattca 134  Q
    ||||||| ||||| | || ||| ||||||||||||| ||||||||||||||| |||||||| |||||||    
T  82901 tatagaaatacatttttccactgaaacaatgaagtgtttgttgttataacaacaacactaagaaattca 82833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0330 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0330
Description:

Target: scaffold0330; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 19863 - 19806
Alignment:
Q  1 tatgtctaccgaagaaattacttattgaggttttgttgtccttaaatacaagaaggat 58  Q
    |||||||| ||||||||||||||||| || || |||||||| ||||||||| ||||||    
T  19863 tatgtctatcgaagaaattacttattaagcttctgttgtccctaaatacaacaaggat 19806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0240 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0240
Description:

Target: scaffold0240; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 3881 - 3824
Alignment:
Q  1 tatgtctaccgaagaaattacttattgaggttttgttgtccttaaatacaagaaggat 58  Q
    |||||||| ||||||||||||||||| || || |||||||| ||||||||| ||||||    
T  3881 tatgtctatcgaagaaattacttattaagcttctgttgtccctaaatacaacaaggat 3824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 66 - 110
Target Start/End: Complemental strand, 30628653 - 30628609
Alignment:
Q  66 tatagaattacatctctcgactcaaacaatgaagtgcttgttgtt 110  Q
    ||||||| ||||||| |||||| ||||||||||||||||||||||    
T  30628653 tatagaaatacatctttcgactgaaacaatgaagtgcttgttgtt 30628609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 74 - 134
Target Start/End: Original strand, 25478562 - 25478622
Alignment:
Q  74 tacatctctcgactcaaacaatgaagtgcttgttgttataacaagaacactaaaaaattca 134  Q
    ||||||| | |||| |||| | |||||| ||||||||||||||| |||||||| |||||||    
T  25478562 tacatcttttgactgaaacgaggaagtgtttgttgttataacaacaacactaagaaattca 25478622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 74 - 110
Target Start/End: Complemental strand, 30618635 - 30618599
Alignment:
Q  74 tacatctctcgactcaaacaatgaagtgcttgttgtt 110  Q
    ||||||| |||||| ||||||||||||||||||||||    
T  30618635 tacatctttcgactgaaacaatgaagtgcttgttgtt 30618599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 74 - 134
Target Start/End: Complemental strand, 30655450 - 30655391
Alignment:
Q  74 tacatctctcgactcaaacaatgaagtgcttgttgttataacaagaacactaaaaaattca 134  Q
    ||||||| ||||||  |||||||||||  ||||||||||||||| |||||||| |||||||    
T  30655450 tacatctttcgactgtaacaatgaagtt-ttgttgttataacaacaacactaagaaattca 30655391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University