View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10892_12 (Length: 309)
Name: NF10892_12
Description: NF10892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10892_12 |
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Alignment Details
Target: chr7 (Bit Score: 210; Significance: 1e-115; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 40847046 - 40847271
Alignment:
| Q |
1 |
aacaaaatatgtcttgggaagtttacaatccatttattataaaaataaataaatcaaaacactcatctatgtggtagttcttaataaccataatcttcaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
40847046 |
aacaaaatatgtcttgggaagtttacaatccatttattataaaaataaataaatcaaaacactcatctatttggtagttcttaataaccataatcttcaa |
40847145 |
T |
|
| Q |
101 |
cctcttagataaagctttacgcatagaaaaacaattaactatatatgtattcctccgattggaagaagactttcattataaataaccatttgacaacatt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40847146 |
cctcttagataaagctttacgcatagaaaaacaattaactatatatgtatttctccgattggaagaagactttcattataaataaccatttgacaacatt |
40847245 |
T |
|
| Q |
201 |
catgccttcctttaacaccaaccttt |
226 |
Q |
| |
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|||| ||| ||||||||||||||||| |
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| T |
40847246 |
catgtctttctttaacaccaaccttt |
40847271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 1 - 269
Target Start/End: Original strand, 40842869 - 40843132
Alignment:
| Q |
1 |
aacaaaatatgtcttgggaagtttacaatccatttattataaaaataaataaatcaaaacactcatctat---gtggtagttcttaataaccataatctt |
97 |
Q |
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|||||||||| | ||||||||||||||||||||||||| |||||||||||||||| ||||||||||||| || |||||| |||||||||||||||| |
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| T |
40842869 |
aacaaaatataacatgggaagtttacaatccatttattacaaaaataaataaatcataacactcatctatttagtactagttcctaataaccataatctt |
40842968 |
T |
|
| Q |
98 |
caacctcttagataaagctttacgcatagaaaaacaattaactatatatgtattcctccgattggaagaagactttcattataaataaccatttgacaac |
197 |
Q |
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| T |
40842969 |
caacctcttggataaagctttaggcataggaaaacaattaac----catgcattcctcc----ggaagaaggctctcattatagataaccatttgacaac |
40843060 |
T |
|
| Q |
198 |
attcatgccttcctttaacaccaaccttttcaatcatatcggtactcaaattaaacctttccacttcttcgt |
269 |
Q |
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||||||| |||||||||||||||||||| |||||||| |||||| ||||||||||||||||||||||||||| |
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| T |
40843061 |
attcatgtcttcctttaacaccaaccttctcaatcatgtcggtattcaaattaaacctttccacttcttcgt |
40843132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 251 - 301
Target Start/End: Original strand, 40847265 - 40847315
Alignment:
| Q |
251 |
aacctttccacttcttcgtctatatttaaataaaatatatccatattcttc |
301 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
40847265 |
aacctttccacttcttcgtctatatttaaataaaatatatccctattcttc |
40847315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 4040944 - 4041145
Alignment:
| Q |
1 |
aacaaaatatgtcttgggaagtttacaatccatttattataaaaataaataaatcaaaacactcatctatgtggtagttcttaataaccataatcttcaa |
100 |
Q |
| |
|
||||||||||| | |||| |||||||||||||||||||||| | |||| |||||| ||||||||||||| || ||||| ||||| ||||||| |
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| T |
4040944 |
aacaaaatatgacatgggtagtttacaatccatttattatata--taaagaaatcataacactcatctat--------tcctaatatccatactcttcaa |
4041033 |
T |
|
| Q |
101 |
cctcttagataaagctttacgcatagaaaaacaattaactatatatgtattcctccgattggaagaagactttcattataaataaccatttgacaacatt |
200 |
Q |
| |
|
|||||||| ||||||| || || | |||| ||| ||| || | |||||| | ||||||||||| |||||||||||||||||| | |||||||||| |
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| T |
4041034 |
cctcttaggtaaagctatatgctaatgaaaataatcaaccat----gcattccttcaattggaagaaggctttcattataaataaccgtctgacaacatt |
4041129 |
T |
|
| Q |
201 |
catgccttcctttaac |
216 |
Q |
| |
|
|| |||||||||||| |
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|
| T |
4041130 |
tataccttcctttaac |
4041145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 149 - 216
Target Start/End: Complemental strand, 46503118 - 46503051
Alignment:
| Q |
149 |
attcctccgattggaagaagactttcattataaataaccatttgacaacattcatgccttcctttaac |
216 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||| |||| ||||||||| ||||| |
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| T |
46503118 |
attcctccaattggaagaagactttcattataaataaccatttgactacatctatgccttccattaac |
46503051 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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