View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10892_13 (Length: 308)
Name: NF10892_13
Description: NF10892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10892_13 |
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| [»] scaffold0103 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 116; Significance: 5e-59; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 118 - 283
Target Start/End: Original strand, 13485944 - 13486113
Alignment:
| Q |
118 |
ggttcaacatgcaataactggagcaataattgaagtttcagtaacatcataannnnnnnatccacataatcaaaatggtttgtgggaacattgaccggta |
217 |
Q |
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| T |
13485944 |
ggttcaacatgcaataactggagcaataattgaagtttcagtaacatcataatttttttatccacataatcaaaatggtttgtgggaacattggccggta |
13486043 |
T |
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| Q |
218 |
cggatgaagcat----agaacttacattttccgtagttttcaaaatggcaatgattttccttatttcttg |
283 |
Q |
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| T |
13486044 |
cggatgaagcatcaagagaacttacattttcagtggttttcaaaatggcaatgattttccatatttcttg |
13486113 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 2 - 124
Target Start/End: Original strand, 13485798 - 13485920
Alignment:
| Q |
2 |
caacaaaaatatcaagtgtactagatggtttaacaaccttattagagataagatctacttgactcacaaactcaacacattgtttgacagaagttttaaa |
101 |
Q |
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| T |
13485798 |
caacaaaaatatcaagtgtactagatggtttaacaaccttattagagataagatctacttgactcataaactcaacacattgtttgacagaggttttaaa |
13485897 |
T |
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| Q |
102 |
aacaagatcaatattaggttcaa |
124 |
Q |
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| T |
13485898 |
aacaagatcaatattaggttcaa |
13485920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0103 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0103
Description:
Target: scaffold0103; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 2 - 128
Target Start/End: Complemental strand, 36392 - 36266
Alignment:
| Q |
2 |
caacaaaaatatcaagtgtactagatggtttaacaaccttattagagataagatctacttgactcacaaactcaacacattgtttgacagaagttttaaa |
101 |
Q |
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| T |
36392 |
caacaaaaatatcaggtgtactagatgttttaacaaccttatcagagacatgatctacttgactcgtataatcaacacagggtttcacaggagtttcaaa |
36293 |
T |
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| Q |
102 |
aacaagatcaatattaggttcaacatg |
128 |
Q |
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|||||||| | |||| |||||||||| |
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| T |
36292 |
cacaagatcgacattaagttcaacatg |
36266 |
T |
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