View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10892_14 (Length: 302)
Name: NF10892_14
Description: NF10892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10892_14 |
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Alignment Details
Target: chr4 (Bit Score: 151; Significance: 6e-80; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 5 - 159
Target Start/End: Original strand, 42677360 - 42677514
Alignment:
| Q |
5 |
tgaacacatatatactacatgttttcgtggtaccttcagaacatgttcacgccatgtttgttttttaagtgtttgtaccgattctattatgaaccacgct |
104 |
Q |
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| T |
42677360 |
tgaacacatatatactacatgttttcgtggtaccttcagaacatgttcacgccatgtttgttttttaagtgtttgtaccgattctattgtgaaccacgct |
42677459 |
T |
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| Q |
105 |
agccatcaattgaaaaatattgtaaggggaggttaattcatacagctttgtctaa |
159 |
Q |
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| T |
42677460 |
agccatcaattgaaaaatattgtaaggggaggttaattcatacagctttgtctaa |
42677514 |
T |
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Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 100 - 148
Target Start/End: Complemental strand, 40900512 - 40900464
Alignment:
| Q |
100 |
acgctagccatcaattgaaaaatattgtaaggggaggttaattcataca |
148 |
Q |
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| T |
40900512 |
acgctagccatcaattgggaaatattgcaaagggaggttcattcataca |
40900464 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 53
Target Start/End: Complemental strand, 48968841 - 48968805
Alignment:
| Q |
17 |
tactacatgttttcgtggtaccttcagaacatgttca |
53 |
Q |
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| T |
48968841 |
tactacaggtttttgtggtaccttcagaacatgttca |
48968805 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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