View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10892_2 (Length: 501)
Name: NF10892_2
Description: NF10892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10892_2 |
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Alignment Details
Target: chr4 (Bit Score: 449; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 449; E-Value: 0
Query Start/End: Original strand, 12 - 476
Target Start/End: Original strand, 30876008 - 30876472
Alignment:
| Q |
12 |
atgagatgaagagcatctagggcttgtcttatattagacaataaacctggttgatattcacaacatagtgatgctttaattgaaaaaggaaaaccgttcc |
111 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30876008 |
atgagatgaagagcatctagggcttgtcttatattagacaataaacctggttgatattcacaacatagtgatgctttaattgaaaaaggaaaaccgttcc |
30876107 |
T |
|
| Q |
112 |
aacctccctcttgttcttcaacacttatttcatcattgtcctttggtatcattaaaccttcacatgcttgtgtttcattcctttttagctctttcaagtg |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30876108 |
aacctccctcttgttcttcaacacttatttcatcattgtcctttggtatcattaaaccttcacatgcttgtgtttcattcctttttagctctttcaagtg |
30876207 |
T |
|
| Q |
212 |
tctaactacttcaccaagtaatgatgctttgtccatctgtgtcattaaaaggaaataataataatcagatttttagtgatgaatgactgatttaacatat |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30876208 |
tctaactacttcaccaagtaatgatgctttgtccatctgtgtcattaaaaggaaataataataatcagatttttagtgatgaatgactgatttaacatat |
30876307 |
T |
|
| Q |
312 |
ttatttctactggtatttttgctttacaattcaaactataagcatgatgttgaatttaagtgtgagtggttagtctcacatcgactataaacgacctgaa |
411 |
Q |
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|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||| ||||||| |
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| T |
30876308 |
ttatttctactagtatttttgctttacaattcaaactataagcatgatgttgaatttaagtgttagtggttagtctcacatcaactataaacaacctgaa |
30876407 |
T |
|
| Q |
412 |
tgaaagatatataagagaggtttctcatatactaaatgtttaagtttaacgtatagattgtggtg |
476 |
Q |
| |
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|
| T |
30876408 |
tgaaagatatataagagaggtttctcatatactaaatgtttaagtttaacgtatagattgtggtg |
30876472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 369 - 401
Target Start/End: Original strand, 25848953 - 25848985
Alignment:
| Q |
369 |
aagtgtgagtggttagtctcacatcgactataa |
401 |
Q |
| |
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||||||||||||||||||| ||||||||||||| |
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|
| T |
25848953 |
aagtgtgagtggttagtctaacatcgactataa |
25848985 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 72; Significance: 2e-32; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 15 - 246
Target Start/End: Original strand, 39331652 - 39331883
Alignment:
| Q |
15 |
agatgaagagcatctagggcttgtcttatattagacaataaacctggttgatattcacaacatagtgatgctttaattgaaaaaggaaaaccgttccaac |
114 |
Q |
| |
|
|||||||| ||||| || |||| |||||||| |||||||||||| |||| |||||||||||||| ||||||| |||||||| |||| ||||| || | | |
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| T |
39331652 |
agatgaagtgcatcaagtgcttttcttatatcagacaataaaccgggtttatattcacaacataatgatgctctaattgaataaggcaaaccatttaatc |
39331751 |
T |
|
| Q |
115 |
ctccctcttgttcttcaacacttatttcatcattgtcctttggtatcattaaaccttcacatgcttgtgtttcattcctttttagctctttcaagtgtct |
214 |
Q |
| |
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| || |||||| |||||| ||||| |||||| |||| ||||| || | ||| ||||||| |||||||| | |||| |||| ||||||||||| ||| | |
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| T |
39331752 |
caccttcttgtgattcaactcttatctcatcactgtcttttggaataactaacccttcacttgcttgtgctgcatttgttttcagctctttcaaatgtgt |
39331851 |
T |
|
| Q |
215 |
aactacttcaccaagtaatgatgctttgtcca |
246 |
Q |
| |
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|| |||||| | ||||| ||||||||||||| |
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|
| T |
39331852 |
aataacttcagctagtaaggatgctttgtcca |
39331883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 127 - 246
Target Start/End: Original strand, 25574662 - 25574781
Alignment:
| Q |
127 |
cttcaacacttatttcatcattgtcctttggtatcattaaaccttcacatgcttgtgtttcattcctttttagctctttcaagtgtctaactacttcacc |
226 |
Q |
| |
|
||||||| ||||| |||||| |||| ||||| || ||||| ||||||| |||||||||| |||| |||| ||||||||||| ||| ||| |||||| | |
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|
| T |
25574662 |
cttcaactcttatctcatcactgtcttttggaataattaacccttcacttgcttgtgttgcatttgttttcagctctttcaaatgtgtaataacttcaac |
25574761 |
T |
|
| Q |
227 |
aagtaatgatgctttgtcca |
246 |
Q |
| |
|
|| ||| |||| |||||||| |
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|
| T |
25574762 |
aaataaggatgttttgtcca |
25574781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 16 - 106
Target Start/End: Original strand, 32726427 - 32726517
Alignment:
| Q |
16 |
gatgaagagcatctagggcttgtcttatattagacaataaacctggttgatattcacaacatagtgatgctttaattgaaaaaggaaaacc |
106 |
Q |
| |
|
||||||| |||| || |||| |||||||| |||||||||| | |||| |||| |||||||||||||||| |||||||| |||| ||||| |
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|
| T |
32726427 |
gatgaagtccatcaagtgcttttcttatatcagacaataaatccggtttgtattgacaacatagtgatgctctaattgaataagggaaacc |
32726517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 363 - 402
Target Start/End: Complemental strand, 5272711 - 5272672
Alignment:
| Q |
363 |
gaatttaagtgtgagtggttagtctcacatcgactataaa |
402 |
Q |
| |
|
||||| || ||||||||||||||||||||||||||||||| |
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|
| T |
5272711 |
gaattcaaatgtgagtggttagtctcacatcgactataaa |
5272672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 364 - 429
Target Start/End: Original strand, 26534639 - 26534704
Alignment:
| Q |
364 |
aatttaagtgtgagtggttagtctcacatcgactataaacgacctgaatgaaagatatataagaga |
429 |
Q |
| |
|
||||||||||||| || |||||||||||| ||||||||| || |||||| ||||||||||||| |
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|
| T |
26534639 |
aatttaagtgtgaatgattagtctcacattgactataaatgagaaaaatgaaggatatataagaga |
26534704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 16 - 106
Target Start/End: Original strand, 44187291 - 44187381
Alignment:
| Q |
16 |
gatgaagagcatctagggcttgtcttatattagacaataaacctggttgatattcacaacatagtgatgctttaattgaaaaaggaaaacc |
106 |
Q |
| |
|
||||||| ||||| || |||| |||||||| |||||||||| | |||| |||| |||||||||||||||| |||||||| |||| ||||| |
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| T |
44187291 |
gatgaagtgcatcaagtgcttttcttatatcagacaataaatccggtttgtattgacaacatagtgatgctctaattgaataagggaaacc |
44187381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 368 - 427
Target Start/End: Complemental strand, 17489007 - 17488948
Alignment:
| Q |
368 |
taagtgtgagtggttagtctcacatcgactataaacgacctgaatgaaagatatataaga |
427 |
Q |
| |
|
||||| |||||||||||||| ||||| |||||||| || || |||||||||||||||||| |
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|
| T |
17489007 |
taagtttgagtggttagtcttacatcaactataaatgagctaaatgaaagatatataaga |
17488948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 76 - 246
Target Start/End: Original strand, 5538420 - 5538591
Alignment:
| Q |
76 |
atagtgatgctttaattgaaaaaggaaaaccgttccaacctccctcttgttcttcaacactt-atttcatcattgtcctttggtatcattaaaccttcac |
174 |
Q |
| |
|
||||||||||| |||||||| |||| ||||| || | || || |||||| |||||| ||| || ||||||||||| ||||| || ||||| ||||||| |
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|
| T |
5538420 |
atagtgatgctctaattgaataagggaaaccatttaatccaccttcttgtgattcaactctttatctcatcattgtcttttggaataattaacccttcac |
5538519 |
T |
|
| Q |
175 |
atgcttgtgtttcattcctttttagctctttcaagtgtctaactacttcaccaagtaatgatgctttgtcca |
246 |
Q |
| |
|
|||||| | | |||| |||| | ||||||||| ||| ||| |||||| | ||||| |||| |||||||| |
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|
| T |
5538520 |
ttgcttgcgctgcatttgttttcaactctttcaaatgtgtaataacttcagctagtaaggatgttttgtcca |
5538591 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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