View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10892_4 (Length: 387)
Name: NF10892_4
Description: NF10892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10892_4 |
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Alignment Details
Target: chr4 (Bit Score: 353; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 11 - 371
Target Start/End: Complemental strand, 30876152 - 30875792
Alignment:
| Q |
11 |
caaaggacaatgatgaaataagtgttgaagaacaagagggaggttggaacggttttcctttttcaattaaagcatcactatgttgtgaatatcaaccagg |
110 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30876152 |
caaaggacaatgatgaaataagtgttgaagaacaagagggaggttggaacggttttcctttttcaattaaagcatcactatgttgtgaatatcaaccagg |
30876053 |
T |
|
| Q |
111 |
tttattgtctaatataagacaagccctagatgctcttcatctcatcatcatgaaagcagatattgcaacttttggagacagactgaagaatgtctttgtt |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
30876052 |
tttattgtctaatataagacaagccctagatgctcttcatctcatcatcatgaaagcagatattgcaacttttggagacagaatgaagaatgtctttgtt |
30875953 |
T |
|
| Q |
211 |
gtaataagctgtgaagaacaaaactttgatgctgctgaatacagacagtttcttgctggttctgttcaccaagctcttaagtctgtccttagtagatttt |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
30875952 |
gtaataagctgtgaagaacaaaactttgatgctgctgaatacagacagtttcttgctggttctgttcaccaagctcttaagtctgtacttagtagatttt |
30875853 |
T |
|
| Q |
311 |
ctgtttcacaggatatgctaagagcaagaaaaagaaggagggtttctatattcagttcttc |
371 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30875852 |
ctgtttcacaggatatgctaagagcaagaaaaagaaggagggtttctatattcagttcttc |
30875792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 101; Significance: 6e-50; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 11 - 371
Target Start/End: Complemental strand, 39331793 - 39331433
Alignment:
| Q |
11 |
caaaggacaatgatgaaataagtgttgaagaacaagagggaggttggaacggttttcctttttcaattaaagcatcactatgttgtgaatatcaaccagg |
110 |
Q |
| |
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|||| |||| |||||| ||||| |||||| |||||| || || | || ||||| |||| |||||||| ||||||| |||||||||||||| |||| || |
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| T |
39331793 |
caaaagacagtgatgagataagagttgaatcacaagaaggtggattaaatggtttgccttattcaattagagcatcattatgttgtgaatataaacccgg |
39331694 |
T |
|
| Q |
111 |
tttattgtctaatataagacaagccctagatgctcttcatctcatcatcatgaaagcagatattgcaacttttggagacagactgaagaatgtctttgtt |
210 |
Q |
| |
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|||||||||| |||||||| |||| || ||||| |||||||| || || || | ||||| ||||||||||| |||| ||| |||| ||||||||||| |
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| T |
39331693 |
tttattgtctgatataagaaaagcacttgatgcacttcatcttatgataataagggcagagattgcaactttgggaggtagaatgaaaaatgtctttgtc |
39331594 |
T |
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| Q |
211 |
gtaataagctgtgaagaacaaaactttgatgctgctgaatacagacagtttcttgctggttctgttcaccaagctcttaagtctgtccttagtagatttt |
310 |
Q |
| |
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|||| ||||| |||||||||| ||||| | |||||| || ||||||||||||| || || ||||| |||||||||| ||||| ||| |||||||| |
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| T |
39331593 |
ataattagctgcaaagaacaaaattttgaagatgctgagtatcgacagtttcttgccggatcggttcatcaagctcttagatctgtacttgatagatttt |
39331494 |
T |
|
| Q |
311 |
ctgtttcacaggatatgctaagagcaagaaaaagaaggagggtttctatattcagttcttc |
371 |
Q |
| |
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|||||||||| ||||| || | | ||||| ||||||||| |||||||||| |||||||| |
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| T |
39331493 |
ctgtttcacaagatatcttagaaactagaaagagaaggaggatttctatatttagttcttc |
39331433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 257 - 371
Target Start/End: Complemental strand, 32726326 - 32726212
Alignment:
| Q |
257 |
agtttcttgctggttctgttcaccaagctcttaagtctgtccttagtagattttctgtttcacaggatatgctaagagcaagaaaaagaaggagggtttc |
356 |
Q |
| |
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||||| ||||||| |||||||| |||||||||| ||||| ||| |||||||| ||||||||| ||||| || | | ||||| |||||||| |||| |
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| T |
32726326 |
agtttgttgctggatctgttcatcaagctcttagatctgtacttgatagattttttgtttcacaagatatcttagaaactagaaagagaaggagaatttc |
32726227 |
T |
|
| Q |
357 |
tatattcagttcttc |
371 |
Q |
| |
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||||||||| ||||| |
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| T |
32726226 |
tatattcagctcttc |
32726212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 61 - 151
Target Start/End: Complemental strand, 32726517 - 32726427
Alignment:
| Q |
61 |
ggttttcctttttcaattaaagcatcactatgttgtgaatatcaaccaggtttattgtctaatataagacaagccctagatgctcttcatc |
151 |
Q |
| |
|
||||| |||| |||||||| |||||||||||||||| |||| |||| | |||||||||| |||||||| |||| || |||| ||||||| |
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| T |
32726517 |
ggtttcccttattcaattagagcatcactatgttgtcaatacaaaccggatttattgtctgatataagaaaagcacttgatggacttcatc |
32726427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 61 - 371
Target Start/End: Complemental strand, 44187381 - 44187073
Alignment:
| Q |
61 |
ggttttcctttttcaattaaagcatcactatgttgtgaatatcaaccaggtttattgtctaatataagacaagccctagatgctcttcatctcatcatca |
160 |
Q |
| |
|
||||| |||| |||||||| |||||||||||||||| |||| |||| | |||||||||| |||||||| |||| || ||||| ||||||| || || | |
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| T |
44187381 |
ggtttcccttattcaattagagcatcactatgttgtcaatacaaaccggatttattgtctgatataagaaaagcacttgatgcacttcatcctatgataa |
44187282 |
T |
|
| Q |
161 |
tgaaagcagatattgcaacttttggagacagactgaagaatgtctttgttgtaataagctgtgaagaacaaaactttgatgctgctgaatacagacagtt |
260 |
Q |
| |
|
| || ||| | ||||||||||| |||| ||| | ||||||||| ||||| |||| ||||| ||||||| || ||||| | || || || | |||| |
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| T |
44187281 |
taaaggcaaagattgcaactttgggaggtagaataaagaatgtcgttgttataattagctgcaaagaacagaattttgaagatgtcgagtatcg--agtt |
44187184 |
T |
|
| Q |
261 |
tcttgctggttctgttcaccaagctcttaagtctgtccttagtagattttctgtttcacaggatatgctaagagcaagaaaaagaaggagggtttctata |
360 |
Q |
| |
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| ||||||| |||||||| |||||||||| ||||| ||| | |||||||||||||||| ||||| || | | ||||| |||||||| |||||||| |
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| T |
44187183 |
tgttgctggatctgttcatcaagctcttagatctgtacttgatggattttctgtttcacaagatatcttagaaactagaaagagaaggagaatttctata |
44187084 |
T |
|
| Q |
361 |
ttcagttcttc |
371 |
Q |
| |
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||||| ||||| |
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| T |
44187083 |
ttcagctcttc |
44187073 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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