View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10892_6 (Length: 362)
Name: NF10892_6
Description: NF10892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10892_6 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 12 - 362
Target Start/End: Original strand, 7962376 - 7962726
Alignment:
| Q |
12 |
atgaagtgtgaattgaatttcaagcgagctggagcaaatttaatcatgtagttgattatgatttatcattcttaccgctcatctaaatttgcattaaaca |
111 |
Q |
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| T |
7962376 |
atgaagtgtgaattgaatttcaagcgagctggagcaaatttaatcatgtagttgattatgatttatcattcttaccgctcatccaaatttgcattaaaca |
7962475 |
T |
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| Q |
112 |
catttgtttatgaagctcatgcgcaatataaatgcatatgatacaataata--tgaannnnnnnaaatttagcatacgataatgttaaaccacgttaata |
209 |
Q |
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| T |
7962476 |
cgtttgtttatgaagctcatgcgcaatataaatgcatatgatacaataatatttaaatttttttaaatttagcatacgataatgttaaactacgttaata |
7962575 |
T |
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| Q |
210 |
aatctttttactgtacattttatatgaatgtaaaatacttgaaagaaatatacatttgattattttgcattaaaatataattatttattaaaaatcacac |
309 |
Q |
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| T |
7962576 |
aattcttttactgtacattttatatgaatgtaaaatacttgaaagaaatatgcatttgattattttgaattaaaatatgattatttattaaaaatcacac |
7962675 |
T |
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| Q |
310 |
-taataatgctactatccttcttccaatccccatatcgtcgtaaacacacacct |
362 |
Q |
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| T |
7962676 |
ttaataatgctactatccttcttccaatccccata---tcgtaaacacacacct |
7962726 |
T |
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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 291
Target Start/End: Original strand, 6005713 - 6005764
Alignment:
| Q |
238 |
tgtaaaatacttgaaagaaatatacatttgattattttgcattaaaatataatt |
291 |
Q |
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| T |
6005713 |
tgtaaaatatttgaaagaaatataca-ttgattatttt-cattataatataatt |
6005764 |
T |
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