View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10892_9 (Length: 344)
Name: NF10892_9
Description: NF10892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10892_9 |
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Alignment Details
Target: chr1 (Bit Score: 117; Significance: 1e-59; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 27 - 195
Target Start/End: Complemental strand, 39446352 - 39446184
Alignment:
| Q |
27 |
ataaccaaacatttgagctcaattgttgatgaactccaccaataacgaattttttaggagaacttgggttcaattcttaagtgaaatattttttggtcaa |
126 |
Q |
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|||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||||||||| |||| ||| ||||| |||||||| |||| |||| ||| |
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| T |
39446352 |
ataaccaaacatttgacctcaattgttgatgaactccaccgataacaaattttttaggagaatttggattcgattctaaagtgaaacatttgttggccaa |
39446253 |
T |
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| Q |
127 |
attttacttatctcccaaccgaattcaggattacgagagcccttctcgttgaaactagagggtaaatac |
195 |
Q |
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| T |
39446252 |
attttatttctctcccaaccgaattcaggattacgagagcccttctcgttgaaaccagagggtaaatac |
39446184 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 220 - 303
Target Start/End: Complemental strand, 39446166 - 39446083
Alignment:
| Q |
220 |
ctctccttagcaaatgtttgttagatttatttccaatgtcaagttctatttaatttaattcaatcctccagtatatagaaaaat |
303 |
Q |
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| T |
39446166 |
ctctccttaacaaatgtttgttagatttatttccaatgtcaagttctatttaatttaattcaatcctccaatatatagaaaaat |
39446083 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 27 - 86
Target Start/End: Complemental strand, 39467689 - 39467630
Alignment:
| Q |
27 |
ataaccaaacatttgagctcaattgttgatgaactccaccaataacgaattttttaggag |
86 |
Q |
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||||||||||||||||| | |||||||||||||||||||||| |||| ||||||||||| |
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| T |
39467689 |
ataaccaaacatttgagattaattgttgatgaactccaccaaggacgatttttttaggag |
39467630 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 298 - 338
Target Start/End: Complemental strand, 39445292 - 39445252
Alignment:
| Q |
298 |
aaaaatgttgatgatataattttcttgaaatttttctttag |
338 |
Q |
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| T |
39445292 |
aaaaatgttgataatataattttcttgaaatttttctttag |
39445252 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 54; Significance: 6e-22; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 221 - 341
Target Start/End: Complemental strand, 35314931 - 35314811
Alignment:
| Q |
221 |
tctccttagcaaatgtttgttagatttatttccaatgtcaagttctatttaatttaat-tcaatcctccagtatatagaaaaatgttgatgatataattt |
319 |
Q |
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|||||||| ||||||||||||||||||| ||||||| || |||||||||||||||| ||||| ||| | ||| || |||||||||||| ||||||||| |
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| T |
35314931 |
tctccttaataaatgtttgttagatttatcgccaatgtaaaattctatttaatttaatatcaattctctaatattta-aaaaatgttgataatataattt |
35314833 |
T |
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| Q |
320 |
tcttgaaatttttctttagcag |
341 |
Q |
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|||| |||||||||||||||| |
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| T |
35314832 |
tctttgaatttttctttagcag |
35314811 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 230 - 323
Target Start/End: Complemental strand, 35315858 - 35315764
Alignment:
| Q |
230 |
caaatgtttgttagatttatttccaatgtcaagttctatttaatttaat-tcaatcctccagtatatagaaaaatgttgatgatataattttctt |
323 |
Q |
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||||||||||| ||| ||||| | |||||| |||||||||||||||| ||||||||||| ||| || |||||||||||| ||||| ||||||| |
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| T |
35315858 |
caaatgtttgtaagagttattgttagtgtcaaattctatttaatttaatatcaatcctccaatatttaaaaaaatgttgataatatatttttctt |
35315764 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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