View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10892_low_2 (Length: 322)
Name: NF10892_low_2
Description: NF10892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10892_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 169; Significance: 1e-90; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 134 - 306
Target Start/End: Original strand, 3987928 - 3988100
Alignment:
| Q |
134 |
ccctgcttggaataggttgtaaaacatgggaacaacattcattgctcaactttggaactagcatctgtgagtaatttgatcatttggatttcttagacac |
233 |
Q |
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| T |
3987928 |
ccctgcttggaataggttgtaaaacacgggaacaacattcattgctcaactttggaactagcatctgtgagtaatttgatcatttggatttcttagacac |
3988027 |
T |
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| Q |
234 |
gaaaattctattccacttataataatatacaggtaaaaaatgcctatttaaatacattaattatacttgtttg |
306 |
Q |
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| T |
3988028 |
gaaaattctattccacttataataatatacaggtaaaaaatgcctatttaaatacattaattatacttgtttg |
3988100 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 15 - 68
Target Start/End: Original strand, 3987809 - 3987862
Alignment:
| Q |
15 |
agaagaatattcaaggaaagcttccaaacaagttcattcaggttagggattgga |
68 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3987809 |
agaagaatattcaaggaaagcttccaaacaagttcattcaggttagggattgga |
3987862 |
T |
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