View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10893_high_2 (Length: 422)
Name: NF10893_high_2
Description: NF10893
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10893_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 377; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 18 - 409
Target Start/End: Original strand, 51359992 - 51360384
Alignment:
| Q |
18 |
atcaggtactttcacactccaattcttaactgtgacaaccaacacctgcaagaataattac-aaaagaattagttaacacataattatttggagaaaatg |
116 |
Q |
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| T |
51359992 |
atcaggtactttcacactccaattcttaactgtgacaaccaacacctgcaagaataattactaaaagaattagttaacacataattatttggagaaaatg |
51360091 |
T |
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| Q |
117 |
aagaaaagggtacctgtaaaatactcaacaatggactctcccccggaattcgtttacgatagaatctctttcccgcaacaatgcaaataagtgcagaggc |
216 |
Q |
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| T |
51360092 |
aagaaaagggtacctgtaaaatactcaacaatggactctccccaggaattcgtttacgatagaatctctttccagcaacaatgcaaataagtgcagaggc |
51360191 |
T |
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| Q |
217 |
agaacatgagagagatataagaaaacctttgtaccaatcgaagattgtgctaacataaactacaaaagtgacacctaagctagcaccaattgtaatacta |
316 |
Q |
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| T |
51360192 |
agaacatgagagagatataagaaaacctttgtaccaatcgaagattgtgctaacataaactacaaaagtgacacctaagctagcaccaattgtaatacta |
51360291 |
T |
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| Q |
317 |
aacaaaaaccaattgaagaagcttgctagttggagatattcttttggattcatatcatcaaattgatctgctcctagagcaggaacacaacct |
409 |
Q |
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| T |
51360292 |
aacaaaaaccaattgaagaagcttgctagttggagatattcttttggattcatatcatcaaattgatctgctcctagagcaggaacacaacct |
51360384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 129 - 298
Target Start/End: Original strand, 51350750 - 51350919
Alignment:
| Q |
129 |
cctgtaaaatactcaacaatggactctcccccggaattcgtttacgatagaatctctttcccgcaacaatgcaaataagtgcagaggcagaacatgagag |
228 |
Q |
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| T |
51350750 |
cctgtaaaatacccaacaatggactccctcctggattcggggtacaatagaatctctttccagaaacaatgcaaattagtgcagcagaagcatataagag |
51350849 |
T |
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| Q |
229 |
agatataagaaaacctttgtaccaatcgaagattgtgctaacataaactacaaaagtgacacctaagcta |
298 |
Q |
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| T |
51350850 |
agatataagaaaacctttgtaccatttgaattgtgatctaacatgaactacaaaggtggcacctaagcta |
51350919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 332 - 405
Target Start/End: Original strand, 51350938 - 51351011
Alignment:
| Q |
332 |
aagaagcttgctagttggagatattcttttggattcatatcatcaaattgatctgctcctagagcaggaacaca |
405 |
Q |
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| T |
51350938 |
aagaagctagctagttggagacggtcctttggattcttgtcatcaaattgatcagctcctagagcaggaacaca |
51351011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 27 - 82
Target Start/End: Original strand, 51350503 - 51350558
Alignment:
| Q |
27 |
tttcacactccaattcttaactgtgacaaccaacacctgcaagaataattacaaaa |
82 |
Q |
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| T |
51350503 |
tttcaccctccaattcttgactgtgacaaccagcaccttcaagaacaattacaaaa |
51350558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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