View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10893_low_1 (Length: 471)
Name: NF10893_low_1
Description: NF10893
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10893_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 371; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 16 - 455
Target Start/End: Complemental strand, 37967961 - 37967517
Alignment:
| Q |
16 |
acacacagatgcccgacacgagactaacatgtcgacaatatcaatagttttaaaaaatggcataattgagtgtaatcacatgtgtcaagtgtcctgttgg |
115 |
Q |
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| T |
37967961 |
acacacagatgcccgacacgagactaacatgtcgacaatgtcaatagttttaaaaaatggcataattgagtgtaatcacatgtgtcaagtgtcctgttgg |
37967862 |
T |
|
| Q |
116 |
tggtaaacacatca---gaagtgtcgttgctacaaaacaaaaactct-aacaatctagaagannnnnnnn-acctgtttatctttaagaactgcacgata |
210 |
Q |
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| T |
37967861 |
tcataaacacatcatcagaagtgtcgttgctacaaaacaaaaactcttaacaatctagaagaattttttttacctgtttatctttaagaactgcacgata |
37967762 |
T |
|
| Q |
211 |
ggttttcaagagttcaccacctaactgaccaccactcttagagttaacaaaaacaagcactggacacttaggtccatcgccttcgatctcatcatcaacc |
310 |
Q |
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| T |
37967761 |
ggttttcaagagttcaccacctaactgaccaccactcttagagttaacaaaaacaagcactggacacttaggtccatcgccttcgatctcatcatcaacc |
37967662 |
T |
|
| Q |
311 |
ttagaatccggcacaagaatgtgattcgggatccaaaagttcttcagaaattcagaatcgtgagacgccattgttgcattcagctgaaaacacaaaacca |
410 |
Q |
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| T |
37967661 |
ttagaatccgacacaagaatgtgattcgggatccaaaagttcttcagaaattcagaatcgtgagacgccattgttgcattcagctgaaaacgcaaaacca |
37967562 |
T |
|
| Q |
411 |
gtaactgaaattcaattgcatgaaaaagctattaaagaactaaac |
455 |
Q |
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| T |
37967561 |
gtaactgaaattcaattgcatgaaaaagctattaaagaactaaac |
37967517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 363 - 436
Target Start/End: Original strand, 13184002 - 13184075
Alignment:
| Q |
363 |
cagaatcgtgagacgccattgttgcattcagctgaaaacacaaaaccagtaactgaaattcaattgcatgaaaa |
436 |
Q |
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| T |
13184002 |
cagaatcgagagatgcaattgttgcattcagctacaaatgcaaaatcagtaactgaaattcaattgcaggaaaa |
13184075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 182 - 282
Target Start/End: Complemental strand, 15969775 - 15969675
Alignment:
| Q |
182 |
acctgtttatctttaagaactgcacgataggttttcaagagttcaccacctaactgaccaccactcttagagttaacaaaaacaagcactggacacttag |
281 |
Q |
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|||||||| || ||||||| || |||||| |||| ||||| || || || | ||||||||||||||| |||||||||||||| | || |||||||||| |
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| T |
15969775 |
acctgtttttcattaagaagtgtacgatatgtttgtaagaggtcccctccaagctgaccaccactcttggagttaacaaaaaccaagacaggacacttag |
15969676 |
T |
|
| Q |
282 |
g |
282 |
Q |
| |
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| |
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| T |
15969675 |
g |
15969675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 58 - 99
Target Start/End: Complemental strand, 43093575 - 43093534
Alignment:
| Q |
58 |
aatagttttaaaaaatggcataattgagtgtaatcacatgtg |
99 |
Q |
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| T |
43093575 |
aataatttgaaaaaatggcataattgaatgtaatcacatgtg |
43093534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 71 - 103
Target Start/End: Complemental strand, 5075395 - 5075363
Alignment:
| Q |
71 |
aatggcataattgagtgtaatcacatgtgtcaa |
103 |
Q |
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| T |
5075395 |
aatggcataattgaatgtaatcacatgtgtcaa |
5075363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 67 - 99
Target Start/End: Complemental strand, 31901318 - 31901286
Alignment:
| Q |
67 |
aaaaaatggcataattgagtgtaatcacatgtg |
99 |
Q |
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| T |
31901318 |
aaaaaatggcataattgaatgtaatcacatgtg |
31901286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 67 - 102
Target Start/End: Complemental strand, 46550832 - 46550797
Alignment:
| Q |
67 |
aaaaaatggcataattgagtgtaatcacatgtgtca |
102 |
Q |
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|||||||| ||||||||||||||||||||||||||| |
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| T |
46550832 |
aaaaaatgacataattgagtgtaatcacatgtgtca |
46550797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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