View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10893_low_11 (Length: 254)
Name: NF10893_low_11
Description: NF10893
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10893_low_11 |
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Alignment Details
Target: chr6 (Bit Score: 99; Significance: 6e-49; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 4076879 - 4076777
Alignment:
| Q |
1 |
tccaattggtggtaggagatccatgatttggtccaatggggtattgaatactctaaacaaattaaaattcaaagagtcaagaaaaccgtatacacataaa |
100 |
Q |
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| T |
4076879 |
tccaattggtggtaggagatccatgatttagtccaatggggtattgaatactctaaacaaattaaaattcaaagagtcaagaaaaccgtatacacataaa |
4076780 |
T |
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| Q |
101 |
tca |
103 |
Q |
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||| |
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| T |
4076779 |
tca |
4076777 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 4178956 - 4179058
Alignment:
| Q |
1 |
tccaattggtggtaggagatccatgatttggtccaatggggtattgaatactctaaacaaattaaaattcaaagagtcaagaaaaccgtatacacataaa |
100 |
Q |
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| T |
4178956 |
tccaattggtggtaggagatccatgatttggtccaatggggtattgaatactctacacaaattaaaattcaaagagtcaagaaaaccgtatacacatgaa |
4179055 |
T |
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| Q |
101 |
tca |
103 |
Q |
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||| |
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| T |
4179056 |
tca |
4179058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 95 - 239
Target Start/End: Complemental strand, 4076466 - 4076300
Alignment:
| Q |
95 |
cataaatcagaaccaaaataagaagaacaggaataaaaaccagtaccg---------------------tcgaccaa-acacgatttcagcaaggagaag |
172 |
Q |
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| T |
4076466 |
cataaatcagaaccaaaataagaagaacaggaataaaaaccagtaccgtcgaagtggaaacagagggtgtcgaccaaaacacgatttcagcaaggagaag |
4076367 |
T |
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| Q |
173 |
gttttgtgaattcagggttttggtaacgcttttaaaggattatatgacaacgctttttagtccctat |
239 |
Q |
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| T |
4076366 |
gttttgtgaattcagggttttggaaacgcttttaaaggattatatgacaactctttttagtccctat |
4076300 |
T |
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