View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10893_low_16 (Length: 205)
Name: NF10893_low_16
Description: NF10893
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10893_low_16 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 63; Significance: 1e-27; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 127 - 189
Target Start/End: Original strand, 4163653 - 4163715
Alignment:
| Q |
127 |
tcacacaatcaacttggcagaatggaccagatgaatgtgagctaaattctttggcagcatgtg |
189 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4163653 |
tcacacaatcaacttggcagaatggaccagatgaatgtgagctaaattctttggcagcatgtg |
4163715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 9 - 64
Target Start/End: Original strand, 4163534 - 4163589
Alignment:
| Q |
9 |
agtagcataggccaattctcatgtcaatcaaaccaacaatgccatttcatgccagg |
64 |
Q |
| |
|
|||| ||| |||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
4163534 |
agtaccatgggccaattctcatgtcaatcaaaccaacaatgccatttcatgtcagg |
4163589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University