View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10893_low_3 (Length: 415)

Name: NF10893_low_3
Description: NF10893
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10893_low_3
NF10893_low_3
[»] chr5 (5 HSPs)
chr5 (102-401)||(4890702-4891001)
chr5 (18-55)||(4891047-4891084)
chr5 (312-396)||(28822735-28822818)
chr5 (310-350)||(7462835-7462875)
chr5 (310-350)||(20501401-20501441)
[»] chr7 (2 HSPs)
chr7 (312-399)||(7836912-7836998)
chr7 (310-350)||(5073273-5073313)
[»] chr1 (5 HSPs)
chr1 (310-351)||(33843218-33843259)
chr1 (310-351)||(33950720-33950761)
chr1 (310-350)||(44579888-44579928)
chr1 (310-350)||(1247261-1247301)
chr1 (310-350)||(41620385-41620425)
[»] scaffold0121 (1 HSPs)
scaffold0121 (309-347)||(4288-4326)
[»] chr4 (2 HSPs)
chr4 (312-349)||(9972134-9972171)
chr4 (310-350)||(41621291-41621331)
[»] chr3 (3 HSPs)
chr3 (310-347)||(21356870-21356907)
chr3 (310-342)||(9219778-9219810)
chr3 (314-350)||(27837276-27837312)
[»] chr8 (1 HSPs)
chr8 (310-350)||(14342528-14342568)
[»] chr6 (1 HSPs)
chr6 (310-350)||(32388232-32388272)
[»] chr2 (3 HSPs)
chr2 (310-350)||(9330525-9330565)
chr2 (318-350)||(13242755-13242787)
chr2 (310-350)||(33549078-33549118)


Alignment Details
Target: chr5 (Bit Score: 200; Significance: 1e-109; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 102 - 401
Target Start/End: Complemental strand, 4891001 - 4890702
Alignment:
Q  102 catttgcacgtgggaaattgtttagaccattggacaaatgaatcgtggcatggcagattggcagtgtcacactgtcactacacaatatccgatctttt-a 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |    
T  4891001 catttgcacgtgggaaattgtttagaccattggacaaatgaatcgtggcatggcagattggctgtgtcacactgtcactacacaatatccgatcttttta 4890902  T
Q  201 aagaaattaaagattttttaaataaaaacagcaacgaaaatatttgnnnnnnnatccaattaatgaagatgtgacataattttacaaataagactcaaat 300  Q
    |||||||||||||||||||||||||||| ||||| |||| ||||||       ||||||||||||||||||||||||||| |||| ||||||| |||| |    
T  4890901 aagaaattaaagattttttaaataaaaatagcaaagaaa-tatttgtttttttatccaattaatgaagatgtgacataatcttacgaataagattcaagt 4890803  T
Q  301 ctagcatatagcttaactcagttgatagagatattgtataatttatgcagattcgagattcgaactccgaacatatctcacttctccatatttaattgtc 400  Q
    ||||| |||| |||| ||||||||||||| |||||| ||||||||||||| |||||||||||||| ||||||||||||||||| || |||||||||||||    
T  4890802 ctagcgtataacttagctcagttgatagaaatattgcataatttatgcaggttcgagattcgaaccccgaacatatctcacttttcaatatttaattgtc 4890703  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 55
Target Start/End: Complemental strand, 4891084 - 4891047
Alignment:
Q  18 gtccttacacgttcagccatgatcacagatctatttat 55  Q
    ||||||||||||||||||||||||||||||||||||||    
T  4891084 gtccttacacgttcagccatgatcacagatctatttat 4891047  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 312 - 396
Target Start/End: Complemental strand, 28822818 - 28822735
Alignment:
Q  312 cttaactcagttgatagagatattgtataatttatgcaga-ttcgagattcgaactccgaacatatctcacttctccatatttaat 396  Q
    |||| |||||||| ||| || |||||||||||||||||||  ||| ||||||||| ||||||  | | ||||||||||||||||||    
T  28822818 cttatctcagttggtagggacattgtataatttatgcagagatcgggattcgaaccccgaac--accccacttctccatatttaat 28822735  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 310 - 350
Target Start/End: Original strand, 7462835 - 7462875
Alignment:
Q  310 agcttaactcagttgatagagatattgtataatttatgcag 350  Q
    ||||||||| ||||||||| || ||||||||||||||||||    
T  7462835 agcttaacttagttgatagggacattgtataatttatgcag 7462875  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 310 - 350
Target Start/End: Original strand, 20501401 - 20501441
Alignment:
Q  310 agcttaactcagttgatagagatattgtataatttatgcag 350  Q
    ||||||||||||||| |||||| |||| |||||||||||||    
T  20501401 agcttaactcagttggtagagacattgcataatttatgcag 20501441  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 312 - 399
Target Start/End: Complemental strand, 7836998 - 7836912
Alignment:
Q  312 cttaactcagttgatagagatattgtataatttatgca-gattcgagattcgaactccgaacatatctcacttctccatatttaattgt 399  Q
    ||||||||||||||||| || ||||||||||||||||| |  ||| | ||||||||||||||| |   |||||||||| ||||||||||    
T  7836998 cttaactcagttgatagggacattgtataatttatgcagggatcggggttcgaactccgaacaca--ccacttctccacatttaattgt 7836912  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 310 - 350
Target Start/End: Original strand, 5073273 - 5073313
Alignment:
Q  310 agcttaactcagttgatagagatattgtataatttatgcag 350  Q
    ||||||||||||||| ||||||||||||||| | |||||||    
T  5073273 agcttaactcagttggtagagatattgtatattatatgcag 5073313  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 310 - 351
Target Start/End: Complemental strand, 33843259 - 33843218
Alignment:
Q  310 agcttaactcagttgatagagatattgtataatttatgcaga 351  Q
    |||||| |||||||||||||||||||| ||||||||||||||    
T  33843259 agcttagctcagttgatagagatattgcataatttatgcaga 33843218  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 310 - 351
Target Start/End: Original strand, 33950720 - 33950761
Alignment:
Q  310 agcttaactcagttgatagagatattgtataatttatgcaga 351  Q
    |||||| |||||||||||||||||||| ||||||||||||||    
T  33950720 agcttagctcagttgatagagatattgcataatttatgcaga 33950761  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 310 - 350
Target Start/End: Original strand, 44579888 - 44579928
Alignment:
Q  310 agcttaactcagttgatagagatattgtataatttatgcag 350  Q
    |||||| ||||||||||||||| ||||||||||||||||||    
T  44579888 agcttagctcagttgatagagacattgtataatttatgcag 44579928  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 310 - 350
Target Start/End: Original strand, 1247261 - 1247301
Alignment:
Q  310 agcttaactcagttgatagagatattgtataatttatgcag 350  Q
    ||||||||||||||||||  ||||||| |||||||||||||    
T  1247261 agcttaactcagttgataaggatattgcataatttatgcag 1247301  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 310 - 350
Target Start/End: Original strand, 41620385 - 41620425
Alignment:
Q  310 agcttaactcagttgatagagatattgtataatttatgcag 350  Q
    |||||||||||||||||||  | ||||||||||||||||||    
T  41620385 agcttaactcagttgataggaacattgtataatttatgcag 41620425  T

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Target: scaffold0121 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0121
Description:

Target: scaffold0121; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 309 - 347
Target Start/End: Original strand, 4288 - 4326
Alignment:
Q  309 tagcttaactcagttgatagagatattgtataatttatg 347  Q
    ||||| |||||||||| ||||||||||||||||||||||    
T  4288 tagctgaactcagttggtagagatattgtataatttatg 4326  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 312 - 349
Target Start/End: Original strand, 9972134 - 9972171
Alignment:
Q  312 cttaactcagttgatagagatattgtataatttatgca 349  Q
    |||||||||||||||||||||| |||||||| ||||||    
T  9972134 cttaactcagttgatagagataatgtataatatatgca 9972171  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 310 - 350
Target Start/End: Complemental strand, 41621331 - 41621291
Alignment:
Q  310 agcttaactcagttgatagagatattgtataatttatgcag 350  Q
    |||||| |||| |||| ||||||||||||||||||||||||    
T  41621331 agcttagctcaattgacagagatattgtataatttatgcag 41621291  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 310 - 347
Target Start/End: Original strand, 21356870 - 21356907
Alignment:
Q  310 agcttaactcagttgatagagatattgtataatttatg 347  Q
    |||||||||||||||||||| |||||||||||| ||||    
T  21356870 agcttaactcagttgatagatatattgtataatatatg 21356907  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 310 - 342
Target Start/End: Original strand, 9219778 - 9219810
Alignment:
Q  310 agcttaactcagttgatagagatattgtataat 342  Q
    |||||| ||||||||||||||||||||||||||    
T  9219778 agcttagctcagttgatagagatattgtataat 9219810  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 314 - 350
Target Start/End: Original strand, 27837276 - 27837312
Alignment:
Q  314 taactcagttgatagagatattgtataatttatgcag 350  Q
    ||||||| |||||||||| ||||||||||||||||||    
T  27837276 taactcaattgatagagacattgtataatttatgcag 27837312  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 310 - 350
Target Start/End: Complemental strand, 14342568 - 14342528
Alignment:
Q  310 agcttaactcagttgatagagatattgtataatttatgcag 350  Q
    ||||||||||||||| |||||| |||| |||||||||||||    
T  14342568 agcttaactcagttggtagagacattgcataatttatgcag 14342528  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 310 - 350
Target Start/End: Original strand, 32388232 - 32388272
Alignment:
Q  310 agcttaactcagttgatagagatattgtataatttatgcag 350  Q
    ||||||||||||||||||| || |||| |||||||||||||    
T  32388232 agcttaactcagttgatagggacattgcataatttatgcag 32388272  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 310 - 350
Target Start/End: Complemental strand, 9330565 - 9330525
Alignment:
Q  310 agcttaactcagttgatagagatattgtataatttatgcag 350  Q
    ||||||||||||||||||||||||||| ||| | |||||||    
T  9330565 agcttaactcagttgatagagatattgcatattatatgcag 9330525  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 318 - 350
Target Start/End: Complemental strand, 13242787 - 13242755
Alignment:
Q  318 tcagttgatagagatattgtataatttatgcag 350  Q
    ||||||||||||||||||| |||||||||||||    
T  13242787 tcagttgatagagatattgcataatttatgcag 13242755  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 310 - 350
Target Start/End: Complemental strand, 33549118 - 33549078
Alignment:
Q  310 agcttaactcagttgatagagatattgtataatttatgcag 350  Q
    |||||| |||||||||||||||||||||||| | |||||||    
T  33549118 agcttagctcagttgatagagatattgtatattatatgcag 33549078  T

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