View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10893_low_4 (Length: 414)
Name: NF10893_low_4
Description: NF10893
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10893_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 388; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 6 - 397
Target Start/End: Complemental strand, 3879305 - 3878914
Alignment:
| Q |
6 |
agcagcacagttaagtgtcactagactcactacaggtaaaaggacctattgtaaactatttcacatgtgggtttgaaagatctgcataagtgagaaaaca |
105 |
Q |
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| T |
3879305 |
agcagcacagttaagtgtcactagactcactacaggtaaaaggacctattgtaaactatttcacatgtgggtttgaaagatctgcataagtgagaaaaca |
3879206 |
T |
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| Q |
106 |
ataatcacaagataatcattcaaaattgaaaatatgcatctttacaattacattgaactactccctaagaagaagttcgggttatttgcatttccatttc |
205 |
Q |
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| T |
3879205 |
ataatcacaagataatcattcaaaattgaaaatatgcatctttacaattacattgaactactccctaagaagaagttcgggttatttgcatttccatttc |
3879106 |
T |
|
| Q |
206 |
cattgatgagagcaagcaaaattggatcaacttgttcagcaacatttccaaggtgatcattattgtacaatctcggagaaatcaaatgagcagctggagg |
305 |
Q |
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| T |
3879105 |
cattgatgagagcaagcaaaattggatcaacttgttcagcaacatttccaaggtgatcattaatgtacaatctcggagaaatcaaatgagcagctggagg |
3879006 |
T |
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| Q |
306 |
tggcatcatattgttaaagctggagctaggttgaaattgttgaggtccctgctcattctttggtatttgaggaattctaaaagagggattat |
397 |
Q |
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| T |
3879005 |
tggcatcatattgttaaagctggagctaggttgaaattgttgaggtccctgctcattctttggtatttgaggaattctaaaagagggattat |
3878914 |
T |
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