View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10893_low_5 (Length: 412)

Name: NF10893_low_5
Description: NF10893
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10893_low_5
NF10893_low_5
[»] chr2 (4 HSPs)
chr2 (18-364)||(28486185-28486530)
chr2 (32-329)||(28464446-28464743)
chr2 (32-329)||(28443603-28443894)
chr2 (38-297)||(28436396-28436655)


Alignment Details
Target: chr2 (Bit Score: 311; Significance: 1e-175; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 18 - 364
Target Start/End: Complemental strand, 28486530 - 28486185
Alignment:
Q  18 aaattgtacctgtaaaatcggatctccataactctaaaccttgagggttggtgagaaccaaaccacgagaatcatttaataccaatcttgatcccttagg 117  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  28486530 aaattgtacctgtaaaatcggatctccataactgtaaaccttgagggttggtgagaaccaaaccacgagaatcatttaataccaatcttgatcccttag- 28486432  T
Q  118 agcagggttgtctccatttgcataccaaatgatggcatcatcttgtatcttctcataccatatagctagcatgaaaagatcatcaggaagttggtaaaat 217  Q
    |||||| |||| ||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||    
T  28486431 agcaggtttgtttccatttgcataccaaatgatggtatcatcttgtatcttgtcataccatatagctagcaagaaaagatcatcaggaagttggtaaaat 28486332  T
Q  218 ccaaatgcaaaatctcctgaaggagtgagccatcgtgttgtctcatttccagcagtaagtgactcaccaacactcacactcacaccttgatccaatgatt 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28486331 ccaaatgcaaaatctcctgaaggagtgagccatcgtgttgtctcatttccagcagtaagtgactcaccaacactcacactcacaccttgatccaatgatt 28486232  T
Q  318 ctaagctgcatagaattccacaatgaacatagtaattaatgaatgtt 364  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||    
T  28486231 ctaagctgcataaaattccacaatgaacatagtaattaatgaatgtt 28486185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 32 - 329
Target Start/End: Complemental strand, 28464743 - 28464446
Alignment:
Q  32 aaatcggatctccataactctaaaccttgagggttggtgagaaccaaaccacgagaatcatttaataccaatcttgatcccttaggagcagggttgtctc 131  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||  || |||||||||||||||||||||||||||| || |||||||||||||    
T  28464743 aaatctgatctccataactctaaaccttgagggttggtgagaaccaaaccttgaaaatcatttaataccaatcttgatcccttgggtgcagggttgtctc 28464644  T
Q  132 catttgcataccaaatgatggcatcatcttgtatcttctcataccatatagctagcatgaaaagatcatcaggaagttggtaaaatccaaatgcaaaatc 231  Q
    ||||||||||||||||||||||||||| ||||||||| |||||||| |||||||||| ||||||  ||| ||||||||||||||| ||||||||||||||    
T  28464643 catttgcataccaaatgatggcatcattttgtatcttgtcataccaaatagctagcaagaaaagtgcattaggaagttggtaaaacccaaatgcaaaatc 28464544  T
Q  232 tcctgaaggagtgagccatcgtgttgtctcatttccagcagtaagtgactcaccaacactcacactcacaccttgatccaatgattctaagctgcata 329  Q
    || |||||||| ||||||||| |||||| |||| ||||| |||||||||||||||||||| |||||||| |||||||||||||||| |||||||||||    
T  28464543 tcttgaaggagagagccatcgggttgtcccattgccagctgtaagtgactcaccaacactgacactcaccccttgatccaatgattttaagctgcata 28464446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 183; E-Value: 7e-99
Query Start/End: Original strand, 32 - 329
Target Start/End: Complemental strand, 28443894 - 28443603
Alignment:
Q  32 aaatcggatctccataactctaaaccttgagggttggtgagaaccaaaccacgagaatcatttaataccaatcttgatcccttaggagcagggttgtctc 131  Q
    ||||| || ||||||||||||||||||||||||||||| || ||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| ||    
T  28443894 aaatctgaactccataactctaaaccttgagggttggtcagcaccaaaccatgagaatcatttaatatcaatcttgatcccttaggagcagggttgtttc 28443795  T
Q  132 catttgcataccaaatgatggcatcatcttgtatcttctcataccatatagctagcatgaaaagatcatcaggaagttggtaaaatccaaatgcaaaatc 231  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||| |||| ||||||||||||||||||||||| ||||||    
T  28443794 catttgcataccaaatgatggcatcatcttgtatcttgtcataccatatagctagcaagaaaagctcattaggaagttggtaaaatccaaatgaaaaatc 28443695  T
Q  232 tcctgaaggagtgagccatcgtgttgtctcatttccagcagtaagtgactcaccaacactcacactcacaccttgatccaatgattctaagctgcata 329  Q
    ||||||||||| || ||| || |||||  || | |||||| ||||||||||||||      ||| | |||||||||||||||||||||||||||||||    
T  28443694 tcctgaaggagagaaccaacgagttgtgccactgccagcaataagtgactcacca------acaattacaccttgatccaatgattctaagctgcata 28443603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 38 - 297
Target Start/End: Complemental strand, 28436655 - 28436396
Alignment:
Q  38 gatctccataactctaaaccttgagggttggtgagaaccaaaccacgagaatcatttaataccaatcttgatcccttaggagcagggttgtctccatttg 137  Q
    |||||||||| |||||||||||||||||||||||| | ||| ||| |||||||||||||||||||| |||||||||||||| |||||||||| |||||||    
T  28436655 gatctccatagctctaaaccttgagggttggtgagcatcaacccatgagaatcatttaataccaatgttgatcccttaggaacagggttgtcaccatttg 28436556  T
Q  138 cataccaaatgatggcatcatcttgtatcttctcataccatatagctagcatgaaaagatcatcaggaagttggtaaaatccaaatgcaaaatctcctga 237  Q
    ||||||||||||||| ||||  |||||| ||  |||||||||||||||||| |||||| | ||  ||||||||||||||||||||||| |||||||| ||    
T  28436555 cataccaaatgatggaatcagtttgtattttgacataccatatagctagcaagaaaagctgatttggaagttggtaaaatccaaatgcgaaatctcccga 28436456  T
Q  238 aggagtgagccatcgtgttgtctcatttccagcagtaagtgactcaccaacactcacact 297  Q
    ||||| |||||| || |||||| ||||||||||||| ||||| ||||| | |||||||||    
T  28436455 aggagagagccaacgagttgtcccatttccagcagtgagtgagtcacctagactcacact 28436396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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