View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10893_low_6 (Length: 393)
Name: NF10893_low_6
Description: NF10893
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10893_low_6 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 49 - 393
Target Start/End: Original strand, 2063701 - 2064042
Alignment:
| Q |
49 |
tgttagatcttttaaagaaaaacttcatcatcgagtatgatagaatctagattgaagtagagatttttagtnnnnnnncataatcataaccatggtgtat |
148 |
Q |
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| T |
2063701 |
tgttacatcttttaaagaaaaattttatcatcgagtatgatagaatctagtttgaagtagagatttctagtaa------aaaaacataatcatggtgtat |
2063794 |
T |
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| Q |
149 |
tataattggcaagaaagaatacaaactacta---aaaacaaccc-ataatatttttgtatagagaaagnnnnnnnnttatccataattggtgcgcctttt |
244 |
Q |
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| T |
2063795 |
tataattggcaagaaagaatacaaactactactaaaaacaaccccataatatttttgtatagagagaaaaaaaaaattatccataattggtgcgtctttt |
2063894 |
T |
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| Q |
245 |
tacaagatccaatattataattccttgtatcatttcatctaatttaacattcctaaaaatattcatgatctaaatcccaaaatcaccatacctctactca |
344 |
Q |
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| T |
2063895 |
tacaagatccaatattataattccttgtatcttttcatctaatt-aacattcctaaaaatattcatgatctaaatcccaaaatcaccatacctctactca |
2063993 |
T |
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| Q |
345 |
tttgcattaattttgttctaaagcctcaaaggaaaatcaaaagtgaagc |
393 |
Q |
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| T |
2063994 |
tttgcattaattttgttctaaagcctcaaaggaaaatcaaaagtgaagc |
2064042 |
T |
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