View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10894_high_1_N (Length: 470)

Name: NF10894_high_1_N
Description: NF10894
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10894_high_1_N
NF10894_high_1_N
[»] chr2 (2 HSPs)
chr2 (9-470)||(793804-794265)
chr2 (375-404)||(995833-995862)


Alignment Details
Target: chr2 (Bit Score: 462; Significance: 0; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 462; E-Value: 0
Query Start/End: Original strand, 9 - 470
Target Start/End: Complemental strand, 794265 - 793804
Alignment:
Q  9 gagaagaagatgaggtattgccaaatctatataatgtcatccttgaagcctccccatcttccctatgcagcttcagattttccactatgccatctattac 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  794265 gagaagaagatgaggtattgccaaatctatataatgtcatccttgaagcctccccatcttccctatgcagcttcagattttccactatgccatctattac 794166  T
Q  109 tgccttaccacctgcatgtatacagaaatgctcaaaagccttcttgaaatttggcacatacatttccttattctccactgcccaaattttcctgtgaatc 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  794165 tgccttaccacctgcatgtatacagaaatgctcaaaagccttcttgaaatttggcacatacatttccttattctccactgcccaaattttcctgtgaatc 794066  T
Q  209 atcgaccacacatattgcagttgctcggaatatggcaagacaagagggcctaaggttattatattgatcctcaaagctgaagcagctacacttaatagtg 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  794065 atcgaccacacatattgcagttgctcggaatatggcaagacaagagggcctaaggttattatattgatcctcaaagctgaagcagctacacttaatagtg 793966  T
Q  309 atcgtgaaagcgaaacgcctacaataccattttcatcgggttcctgatacacagactgatatgctttgtcatttgatcccaagtgtgttctcacaagatg 408  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  793965 atcgtgaaagcgaaacgcctacaataccattttcatcgggttcctgatacacagactgatatgctttgtcatttgatcccaagtgtgttctcacaagatg 793866  T
Q  409 ttgaagcttgtacttggcgattcccttgtcctgatttttgttggatagtaaaatggccgctc 470  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  793865 ttgaagcttgtacttggcgattcccttgtcctgatttttgttggatagtaaaatggccgctc 793804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 375 - 404
Target Start/End: Complemental strand, 995862 - 995833
Alignment:
Q  375 tgtcatttgatcccaagtgtgttctcacaa 404  Q
    ||||||||||||||||||||||||||||||    
T  995862 tgtcatttgatcccaagtgtgttctcacaa 995833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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