View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10894_low_3 (Length: 207)

Name: NF10894_low_3

Description: NF10894

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF10894_low_3

[»] chr4 (1 HSPs)

[»] chr8 (1 HSPs)

Target: chr4 (Bit Score: 158; Significance: 3e-84; HSPs: 1)

Name: chr4

Description:

Target: chr4; HSP #1

Raw Score: 158; E-Value: 3e-84

Query Start/End: Original strand, 11 - 189

Target Start/End: Original strand, 34749642 - 34749820

Alignment:

Q	11	aagcataggtcaaagctgctgctaattctatttcatttgctccttctgcagccacacaccataccttacctttgtatggcacattgttctttggagcttg	110	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	34749642	aagcataggtcaaagctgctgctaattctatttcatttgctccttctgcagccacacaccataccttacctttgtatggcacattgttctttggagcttg	34749741	T

Q	111	taatggtgcataatctgtgttagnnnnnnnacctgttaagtctagatcgtaaattggggttccatctgtgtgtaataag	189	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	34749742	taatggtgcataatctgtgttagtttttttacctgttaagtctagatcgtaaattggggttccatctgtgtgtaataag	34749820	T

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Target: chr8 (Bit Score: 75; Significance: 1e-34; HSPs: 1)

Name: chr8

Description:

Target: chr8; HSP #1

Raw Score: 75; E-Value: 1e-34

Query Start/End: Original strand, 11 - 129

Target Start/End: Original strand, 26593023 - 26593141

Alignment:

Q	11	aagcataggtcaaagctgctgctaattctatttcatttgctccttctgcagccacacaccataccttacctttgtatggcacattgttctttggagcttg	110	Q
		\|\|\|\|\|\|\| \| \|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\| \| \|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\| \|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|
T	26593023	aagcatatgacaaagctgctgccaattccacttcatttactccttctgcaaccatacaccataccttacccttgtatggcacattgttctttggagctgg	26593122	T

Q	111	taatggtgcataatctgtg	129	Q
		\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|
T	26593123	taatggtgcatagtctgtg	26593141	T

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