View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10895_high_6 (Length: 211)
Name: NF10895_high_6
Description: NF10895
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10895_high_6 |
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Alignment Details
Target: chr6 (Bit Score: 175; Significance: 2e-94; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 20 - 198
Target Start/End: Complemental strand, 10968811 - 10968633
Alignment:
| Q |
20 |
tctttagcacttattttcatcttgaaaataattttcctaatctctttccctttatcggagtccattaattccttaattcgatcccctaactcggttccac |
119 |
Q |
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| T |
10968811 |
tctttagcacttattttcatcttgaaaataattttcctaatctctttccctttatcggagtccattaattccttaattcgatcccctaactcggttccac |
10968712 |
T |
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| Q |
120 |
tcacaaacccgtcttttgaatccttcagttccaaagcaaccttcatctcctcaaccaaaatcaccttgttcagcctttg |
198 |
Q |
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| T |
10968711 |
tcacaaacccgtcttttgaatccttcagttccaaagcaaccttcatctcgtcaaccaaaatcaccttgttcagcctttg |
10968633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 159; E-Value: 7e-85
Query Start/End: Original strand, 20 - 198
Target Start/End: Complemental strand, 10982761 - 10982583
Alignment:
| Q |
20 |
tctttagcacttattttcatcttgaaaataattttcctaatctctttccctttatcggagtccattaattccttaattcgatcccctaactcggttccac |
119 |
Q |
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| T |
10982761 |
tctttagcacttattttcatcttgaaaataatttgtctaatctctttccccttatcggagtccattaattccttaatttgatcccctaactcggttccac |
10982662 |
T |
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| Q |
120 |
tcacaaacccgtcttttgaatccttcagttccaaagcaaccttcatctcctcaaccaaaatcaccttgttcagcctttg |
198 |
Q |
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| T |
10982661 |
tcacaaacccgtcttttgaatccttcaattccaaagcaaccttcatctcctcaaccaaaatcaccttgttcagcctttg |
10982583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 23 - 198
Target Start/End: Complemental strand, 11002988 - 11002813
Alignment:
| Q |
23 |
ttagcacttattttcatcttgaaaataattttcctaatctctttccctttatcggagtccattaattccttaattcgatcccctaactcggttccactca |
122 |
Q |
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| T |
11002988 |
ttagcacttgttttcatcttcaaaattgtctctctaatctctttccctttttctgattccatcaactccttaactctctcccccaactcatttccactca |
11002889 |
T |
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| Q |
123 |
caaacccgtcttttgaatccttcagttccaaagcaaccttcatctcctcaaccaaaatcaccttgttcagcctttg |
198 |
Q |
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| T |
11002888 |
caaaccctttttttgacccatttagttccaaagccaccttcatttcctcaaccaaaatcattttgttcaacctttg |
11002813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 23 - 156
Target Start/End: Complemental strand, 11080129 - 11079996
Alignment:
| Q |
23 |
ttagcacttattttcatcttgaaaataattttcctaatctctttccctttatcggagtccattaattccttaattcgatcccctaactcggttccactca |
122 |
Q |
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|||||||||||||||||||| ||||| | | |||| ||||||||| || || || ||||| || ||||||| || ||||| ||||| || |||||| |
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| T |
11080129 |
ttagcacttattttcatcttcaaaattgtctctctaacctctttccccttttctgattccatcaactccttaactctctcccccaactcattttcactca |
11080030 |
T |
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| Q |
123 |
caaacccgtcttttgaatccttcagttccaaagc |
156 |
Q |
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| T |
11080029 |
caaacccatcttttgactcattcaattccaaagc |
11079996 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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