View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10895_low_1 (Length: 337)
Name: NF10895_low_1
Description: NF10895
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10895_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 292; Significance: 1e-164; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 7 - 335
Target Start/End: Complemental strand, 4978379 - 4978051
Alignment:
| Q |
7 |
gtcattacctcaacatctaacaccnnnnnnngataggtccattataagagaccctatagggataaatgagatttattcaaaagggtggttgaattttggt |
106 |
Q |
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| T |
4978379 |
gtcattacctcaacatctaacacctttttttgataggtccattataagagaccctgtagggataaatgagatttattcaaaagggtggttgaattttggt |
4978280 |
T |
|
| Q |
107 |
ggagaaacaaataatcgaagcttgaaggtttgggaaacaattagtgcaacaaaaggtgaaacaatcaaaggtttgtttgaattttcacttttagatattc |
206 |
Q |
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| T |
4978279 |
ggagaaacaaataatcgaagcttgaaggtttgggaaataattagtgcaacaaaaggtgaaacaatcaaaggtttgtttgaattttcacttttagatattc |
4978180 |
T |
|
| Q |
207 |
aaaagcttaagaaatatgcacaatccaaagttgaaaatagaaaggtttcaacttttgcggttacttgtgcttatttgttggcattagcggttaaagttga |
306 |
Q |
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| T |
4978179 |
aaaagcttaagaaatatgcacaatccaaagttgaaaataaaaaggtttcaacttttgcggttacttgtgcttatttgttggcattagcggttaaagttga |
4978080 |
T |
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| Q |
307 |
caaaccaaaatctaataagacagcctttg |
335 |
Q |
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| T |
4978079 |
caaaccaaaatctaataagacagcttttg |
4978051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 11 - 325
Target Start/End: Complemental strand, 4995134 - 4994820
Alignment:
| Q |
11 |
ttacctcaacatctaacaccnnnnnnngataggtccattataagagaccctatagggataaatgagatttattcaaaagggtggttgaattttggtggag |
110 |
Q |
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| T |
4995134 |
ttacctcaaaatctaacacctttttttgataggtccattataaaagaccctttaggaataaatgaaattcattcaaaaaaatggatgaattttggtggag |
4995035 |
T |
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| Q |
111 |
aaacaaataatcgaagcttgaaggtttgggaaacaattagtgcaacaaaaggtgaaacaatcaaaggtttgtttgaattttcacttttagatattcaaaa |
210 |
Q |
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||||||||||||| ||||| ||||||||| ||||||| |||||||||||||||||| |||||||||||||||||||||| |||||||| ||||||||||| |
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| T |
4995034 |
aaacaaataatcgtagcttaaaggtttggcaaacaataagtgcaacaaaaggtgaagcaatcaaaggtttgtttgaattatcacttttggatattcaaaa |
4994935 |
T |
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| Q |
211 |
gcttaagaaatatgcacaatccaaagttgaaaatagaaaggtttcaacttttgcggttacttgtgcttatttgttggcattagcggttaaagttgacaaa |
310 |
Q |
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||||||||||||||||||||| || |||||||||| |||||||||||||||||||||||| ||||||||||||||| |||||| ||||||||||||| || |
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| T |
4994934 |
gcttaagaaatatgcacaatctaaggttgaaaataaaaaggtttcaacttttgcggttacatgtgcttatttgttgtcattaggggttaaagttgaccaa |
4994835 |
T |
|
| Q |
311 |
ccaaaatctaataag |
325 |
Q |
| |
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| |||| | |||||| |
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| T |
4994834 |
caaaaacccaataag |
4994820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 7 - 318
Target Start/End: Complemental strand, 4982496 - 4982173
Alignment:
| Q |
7 |
gtcattacctcaacatctaacaccnnnnnnngataggtccattataagagaccctatagggataaatgagatttattcaaaagggtggttgaattttggt |
106 |
Q |
| |
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||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4982496 |
gtcattacctcaatatctaacacctttttttgataggtccattataagagaccctatagggataaatgagatttattcaaaagggtggttgaattttggt |
4982397 |
T |
|
| Q |
107 |
ggagaaacaaataatcgaagcttgaaggtttgggaaacaattagtgcaacaaaaggtgaaacaatcaaaggtttgtttgaattttcacttttagatattc |
206 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| | ||| ||| |||||| ||| ||||||| | ||| |||| |||| ||| ||||||| |
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| T |
4982396 |
ggagaaacaaataatcgaagcttgaaggtttgggaaacaattaatacaataaagggtgaagcaaccaaaggtatttttcaattgtcacctttggatattc |
4982297 |
T |
|
| Q |
207 |
aaaagcttaagaaatatgcacaatccaaagttgaaaa------------tagaaaggtttcaacttttgcggttacttgtgcttatttgttggcattagc |
294 |
Q |
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|||||||||||||| ||||||||||||| ||||||| || ||| ||||||||||| | ||||||||||||||||||||||||| | |
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| T |
4982296 |
aaaagcttaagaaacatgcacaatccaagattgaaaaaaataacaaggttattaagctttcaactttttcagttacttgtgcttatttgttggcatgtac |
4982197 |
T |
|
| Q |
295 |
ggttaaagttgacaaaccaaaatc |
318 |
Q |
| |
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| | ||||||||| |||||||||| |
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| T |
4982196 |
gataaaagttgaccaaccaaaatc |
4982173 |
T |
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