View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10895_low_10 (Length: 218)
Name: NF10895_low_10
Description: NF10895
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10895_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 180; Significance: 2e-97; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 3 - 206
Target Start/End: Complemental strand, 3794477 - 3794274
Alignment:
| Q |
3 |
gagagagaagaaaagagaaagaggaattgtttttcttggaacaatgaagggctgaaggcacgcaggaaaatatatcataaaaggtgccaaggccatagcc |
102 |
Q |
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| T |
3794477 |
gagaaagaagaaaagagaaagaggaattgtttttcttggaacaatgaagggctgaaggcacgcaggtaaatatattataaaaggtgccaaggccatagcg |
3794378 |
T |
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| Q |
103 |
aggagctgcccctggctaaatgtagggagcagtcaacggtacaggcatggcaggctttgcaggagaaaggtctaatctctatttgcttttgcagtggtga |
202 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3794377 |
aggagctgcccctggctaaatgtagggagcagtcaacggtccagacatggcaggctttgcaggagaaaggtctaatctctatttgcttttgcagtggtga |
3794278 |
T |
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| Q |
203 |
tgtc |
206 |
Q |
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|||| |
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| T |
3794277 |
tgtc |
3794274 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 38 - 206
Target Start/End: Original strand, 7783161 - 7783331
Alignment:
| Q |
38 |
ttggaacaatgaagggctgaaggcacgcagga--aaatatatcataaaaggtgccaaggccatagccaggagctgcccctggctaaatgtagggagcagt |
135 |
Q |
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||||||||||||||||||||||||||||||| ||||||| ||||||| ||||||||||| ||||| ||||||||||||||||||| ||||||||||| |
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| T |
7783161 |
ttggaacaatgaagggctgaaggcacgcaggttgaaatatagtataaaagatgccaaggccaaagccaagagctgcccctggctaaatttagggagcagt |
7783260 |
T |
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| Q |
136 |
caacggtacaggcatggcaggctttgcaggagaaaggtctaatctctatttgcttttgcagtggtgatgtc |
206 |
Q |
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||||| | ||||||||| |||||||||||||||| | ||||||||| |||||||||||||||||||||||| |
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| T |
7783261 |
caacgttgcaggcatggtaggctttgcaggagaatgatctaatctccatttgcttttgcagtggtgatgtc |
7783331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 4 - 206
Target Start/End: Original strand, 6660765 - 6660967
Alignment:
| Q |
4 |
agagagaagaaaagagaaagaggaattgtttttcttggaacaatgaagggctgaaggcacgcaggaaaatatatcataaaaggtgccaaggccatagcca |
103 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||| |||||||||||||| |
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| T |
6660765 |
agagagaagaaaagagaaagaggaattgtttttcttggaacaatgaagggctgaaggcacgcaggtaaatatattataaaaggtgtcaaggccatagcca |
6660864 |
T |
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| Q |
104 |
ggagctgcccctggctaaatgtagggagcagtcaacggtacaggcatggcaggctttgcaggagaaaggtctaatctctatttgcttttgcagtggtgat |
203 |
Q |
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|||||||||||||||||||||||||||||||||||| || ||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
6660865 |
ggagctgcccctggctaaatgtagggagcagtcaacagtccagacatggcaggctttgcaagagaaaggtctaatctctatttgcttttgcagtggtgat |
6660964 |
T |
|
| Q |
204 |
gtc |
206 |
Q |
| |
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||| |
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| T |
6660965 |
gtc |
6660967 |
T |
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