View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10895_low_5 (Length: 249)
Name: NF10895_low_5
Description: NF10895
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10895_low_5 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 143; Significance: 3e-75; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 668678 - 668913
Alignment:
| Q |
1 |
tatgggtgcgtgcgtacgtatcatcaccattcaagtcttgtaaaaatattt-ta-ttttaaaatatggtgatactagtttcctacatttgttaaagcaga |
98 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||| || ||||||| |||||||||||||||||||| || ||||||||| | |
|
|
| T |
668678 |
tatgggtgcgtgcgtacgtatcgtcaccattcaagtcttgtaaaaatatttctagttttaaantatggtgatactagtttcctgcagttgttaaag---a |
668774 |
T |
|
| Q |
99 |
aagaaaacaaaattattttaatttacgttaatttattgattgattaatgagagtagctgtatattataatagaagtagaacatattgctatca-nnnnnn |
197 |
Q |
| |
|
||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
668775 |
aagaaaacaaaattattataatttacgtcaatttattgattgattaatgagagtagctgtatattataatagaagtagaacaaattgctatcattttttt |
668874 |
T |
|
| Q |
198 |
nnngaaggaagagcagatttctttaatttattttcccct |
236 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
668875 |
ttttaaggaagagcagatttctttaatttattttcccct |
668913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 6 - 162
Target Start/End: Original strand, 673203 - 673358
Alignment:
| Q |
6 |
gtgcgtgcgtacgtatcatcaccattcaagtcttgt---aaaaatatttt-attttaaaatatggtgatactagtttcctacatttgttaaagcagaaag |
101 |
Q |
| |
|
|||||||||| ||||||| ||| |||||||||| | ||||||||||| |||||||| ||||||||||||||| ||||| ||||||||| |||||| |
|
|
| T |
673203 |
gtgcgtgcgtgtgtatcattaccgttcaagtcttcttataaaaatatttttattttaaattatggtgatactagtgtcctatatttgttaa---agaaag |
673299 |
T |
|
| Q |
102 |
aaaacaaaattattttaatttacgttaatttattgattgattaatgagagtagctgtatat |
162 |
Q |
| |
|
||||||||||| |||||||||||||||| |||| |||||||||||||||||||||||||| |
|
|
| T |
673300 |
aaaacaaaattgttttaatttacgttaa--tattaattgattaatgagagtagctgtatat |
673358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 36 - 172
Target Start/End: Original strand, 671188 - 671324
Alignment:
| Q |
36 |
tcttgtaaaaatatttt-attttaaaatatggtgatactagtttcctacatttgttaaagcagaaagaaaacaaaattatttta--atttacgttaattt |
132 |
Q |
| |
|
|||| |||||||||||| |||||||| || |||||||||||| || |||||||| ||||| ||| |||||||| || ||||| ||||| ||| |||| |
|
|
| T |
671188 |
tcttataaaaatatttttattttaaattacggtgatactagtgtcttacatttgataaag---aaaaaaaacaaatttgttttataatttatgtttattt |
671284 |
T |
|
| Q |
133 |
attgattgattaatgagagtagctgtatattataatagaa |
172 |
Q |
| |
|
||| |||||||||||||||||| |||| ||| |||||||| |
|
|
| T |
671285 |
attaattgattaatgagagtagatgtaaattgtaatagaa |
671324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University