View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10896_high_11 (Length: 243)
Name: NF10896_high_11
Description: NF10896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10896_high_11 |
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Alignment Details
Target: chr4 (Bit Score: 171; Significance: 6e-92; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 20 - 235
Target Start/End: Original strand, 11468829 - 11469041
Alignment:
| Q |
20 |
atgtgtgtgttgttttgatgaatataatgtagtatatgaagtatgtataaacaagtttgcaacttatatatacatttcaaaatccaggacaaagaacaga |
119 |
Q |
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| T |
11468829 |
atgtgtgtgttgttttgatgaatataatgtagtatatgaagtatgtataaacaagtttgcaacttatatatacatttcaaaatccaggacacagaacaga |
11468928 |
T |
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| Q |
120 |
tattgcctaattttatgtctttgttttgaggtctcaattaacacgaggtgaactcttgaagcattattacttnnnnnnnnttaaaactgtgtagagacat |
219 |
Q |
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| T |
11468929 |
tattgccttattttatgtc-ttgttttgaggtctcaattaacacgaggtgaactcttgaagcattattactt--aaaaaattaaaactgtgtagagacat |
11469025 |
T |
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| Q |
220 |
taggcacatgccctta |
235 |
Q |
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|||||||||||||||| |
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| T |
11469026 |
taggcacatgccctta |
11469041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 20 - 235
Target Start/End: Complemental strand, 11522632 - 11522420
Alignment:
| Q |
20 |
atgtgtgtgttgttttgatgaatataatgtagtatatgaagtatgtataaacaagtttgcaacttatatatacatttcaaaatccaggacaaagaacaga |
119 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
11522632 |
atgtgtgtgttgttttgatgaatataatgtagtatatgaagtatgtataaacaagtttgcaacttatatatacatttcaaaatccaggacacagaacaga |
11522533 |
T |
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| Q |
120 |
tattgcctaattttatgtctttgttttgaggtctcaattaacacgaggtgaactcttgaagcattattacttnnnnnnnnttaaaactgtgtagagacat |
219 |
Q |
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| T |
11522532 |
tattgccttattttatgtc-ttgttttgaggtctcaattaacacgaggtgaactcttgaagcattattactt--aaaaaattaaaactgtgtagagacat |
11522436 |
T |
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| Q |
220 |
taggcacatgccctta |
235 |
Q |
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|||||||||||||||| |
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| T |
11522435 |
taggcacatgccctta |
11522420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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